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[187061_at]

Description Y57A10A.24 /REP_DB=WormBase Gene ID /WP=CE25506 /TR=Q9U211 /GB=CAB60767.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 8.4
(-3)
A 		57.6
(3)
A 		13.8
(-2.3)
A 		21.1
(-1.5)
A 		49
B 6.8
(-3)
A 		31
(2.9)
A 		31.4
(3)
A 		9.4
(-2.4)
A 		25
C 7.4
(-3)
A 		12.5
(-2.7)
A 		35
(-1.4)
A 		108.7
(3)
A 		101
avr 7.5
(-3) 		33.7
(1) 		26.7
(-0) 		46.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 16.6
(-0.8)
A 		39
(3)
A 		6.6
(-2.5)
A 		3.7
(-3)
A 		11.3
(-1.7)
A 		5.3
(-2.7)
A 		35
B 7.8
(-3)
A 		43.8
(1.4)
A 		23.6
(-1.1)
A 		56.6
(3)
A 		37
(0.6)
A 		9.2
(-2.8)
A 		49
C 21.7
(3)
A 		10.8
(-1)
A 		13.4
(-0)
A 		13.8
(0.1)
A 		5.2
(-3)
A 		5.5
(-2.9)
A 		17
avr 15.4
(-0.9) 		31.2
(3) 		14.5
(-1.1) 		24.7
(1.4) 		17.8
(-0.3) 		6.7
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.1
(-3)
A 		12.5
(3)
A 		3.6
(-2.7)
A 		3.1
(-3)
A 		9
B 2.2
(-2.8)
A 		7.7
(3)
A 		7.3
(2.6)
A 		2
(-3)
A 		6
C 2.5
(-3)
A 		3.6
(-2.6)
A 		12.2
(0.7)
A 		18.3
(3)
A 		16
avr 2.6
(-3) 		7.9
(3) 		7.7
(2.8) 		7.8
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.1
(-2)
A 		13.9
(3)
A 		1.4
(-2.8)
A 		0.9
(-3)
A 		3.4
(-1.8)
A 		1.3
(-2.8)
A 		13
B 2.7
(-3)
A 		14.6
(2.8)
A 		5.7
(-1.5)
A 		15
(3)
A 		15
(3)
A 		3.4
(-2.7)
A 		12
C 8
(3)
A 		3.3
(-1.5)
A 		3.4
(-1.4)
A 		2.8
(-2)
A 		1.7
(-3)
A 		1.9
(-2.8)
A 		6
avr 4.6
(-1.3) 		10.6
(3) 		3.5
(-2.1) 		6.2
(-0.1) 		6.7
(0.2) 		2.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2721
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.24 NCBI
Target Description Y57A10A.24 /REP_DB=WormBase Gene ID /WP=CE25506 /TR=Q9U211 /GB=CAB60767.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064199 NCBI Caenorhabditis elegans Y57A10A.24 (Y57A10A.24) mRNA, complete cds. 11/11 None
GENEFINDER00000026053 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12243869:12247437:1 11/11 None
Y57A10A.24 ENSEMBL cdna:known chromosome:CEL140:II:12242848:12247513:1 gene:Y57A10A.24 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026028 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12242893-12247434(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.24
Entrez Gene 174864 Entrez gene
SwissProt Q9U211 EMBL-EBI
WormBase CE25506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60767 Hypothetical protein Y57A10A.24 [Caenorhabditis elegans] ref|NP_496600.1| Y57A10A.24 [Caenorhabditis elegans] 0.0
blast CAE73474 Hypothetical protein CBG20925 [Caenorhabditis briggsae] 0.0
blast CAE73474 Hypothetical protein CBG20925 [Caenorhabditis briggsae] 1.0E-168
Sequence
Target Sequence 
>C. ELEGANS:187061_AT
aagaccgcccatatttgctgtaagcggtataaaaatcgactcggcaacagccgtaaaacc
cttctaccccctccattctactacactacaactactatgaaggctcccataaccatagcc
acaactactgcagaaccatacccttttgaatctgttccaaactgccaagaccctgaagcc
cgtccactcatggaaaacggcttcccatacatttgtgatcatatcggagatccgtgtatt
cttcgatcaggatattcgtgtcaagaatctgatattgatgatgtctatgtgtgttgtact
attcaaatgaaccgaatccttccaccacagattccaatgattgggccatttacgtttatg
acgtcatcaactactacaactactgagaagccgattgaagaggaagaagtgattgcgcag
ccgacatgcccattttcatatatgccgtcgaaaaatgttaatcaagatgtgcagcgttgt
ctatcactgtttacgttggactgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACCGCCCATATTTGCTGTAAGC 587 151 1036 Antisense
CTCCATTCTACTACACTACAACTAC 577 235 1106 Antisense
GAAGGCTCCCATAACCATAGCCACA 485 333 1134 Antisense
ACCATACCCTTTTGAATCTGTTCCA 48 87 1170 Antisense
TCCAAACTGCCAAGACCCTGAAGCC 672 585 1191 Antisense
ACGGCTTCCCATACATTTGTGATCA 209 97 1232 Antisense
TCAAATGAACCGAATCCTTCCACCA 77 629 1338 Antisense
AGAAGTGATTGCGCAGCCGACATGC 666 73 1440 Antisense
TGCCCATTTTCATATATGCCGTCGA 588 583 1462 Antisense
GATGTGCAGCGTTGTCTATCACTGT 94 409 1501 Antisense
TATCACTGTTTACGTTGGACTGCCC 96 659 1517 Antisense
Sequence Source Affymetrix Proprietary Database