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[187060_at]

Description M01A8.1 /REP_DB=WormBase Gene ID /WP=CE00275 /TR=SW:P34530 /GB=CAA81606.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 99      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 72      6grp_total > 95      4grp_total > 04      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 945
1 2 3 4 range
A 398.4
(-1.6)
P 		196.9
(-3)
P 		244.3
(-2.7)
P 		1081.9
(3)
P 		885
B 472.5
(-1.4)
P 		329.6
(-2.3)
P 		229.8
(-3)
P 		1141.8
(3)
P 		912
C 521.5
(-0.8)
P 		277.3
(-3)
P 		284.1
(-2.9)
P 		940
(3)
P 		663
avr 464.1
(-1.4) 		267.9
(-2.9) 		252.7
(-3) 		1054.6
(3) 		802

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 237.3
(-3)
P 		359.7
(-0.4)
P 		394.6
(0.3)
P 		390.8
(0.2)
P 		522.8
(3)
P 		509
(2.7)
P 		286
B 304.8
(-3)
P 		400.8
(0.4)
P 		404.2
(0.5)
P 		467.6
(2.7)
P 		475.9
(3)
P 		407.3
(0.6)
P 		171
C 306.1
(-3)
P 		344.3
(-2.1)
P 		327.6
(-2.5)
P 		415.7
(-0.5)
P 		564.7
(3)
P 		543.1
(2.5)
P 		259
avr 282.7
(-3) 		368.3
(-0.8) 		375.5
(-0.7) 		424.7
(0.6) 		521.1
(3) 		486.5
(2.1) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 145.1
(2.3)
P 		42.7
(-3)
P 		63.9
(-1.9)
P 		158.4
(3)
P 		116
B 150.7
(0.1)
P 		81.4
(-2.1)
P 		53.2
(-3)
P 		243.3
(3)
P 		190
C 172.6
(3)
P 		79.7
(-3)
P 		99
(-1.8)
P 		158.5
(2.1)
P 		93
avr 156.1
(1.5) 		67.9
(-3) 		72
(-2.8) 		186.7
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 43.7
(-3)
P 		127.9
(1.4)
P 		85.9
(-0.8)
P 		99.1
(-0.1)
P 		157.7
(3)
P 		123.9
(1.2)
P 		114
B 106.1
(-2.5)
P 		133.4
(-0.8)
P 		98.2
(-3)
P 		123.8
(-1.4)
P 		193.4
(3)
P 		151.9
(0.4)
P 		95
C 113.5
(-1.2)
P 		105
(-1.7)
P 		83.4
(-3)
P 		83.6
(-3)
P 		182.7
(3)
P 		181.8
(2.9)
P 		99
avr 87.8
(-3) 		122.1
(-0.7) 		89.2
(-2.9) 		102.2
(-2) 		177.9
(3) 		152.5
(1.3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6020
Sequence Type Exemplar sequence
Representative Public ID M01A8.1 NCBI
Target Description M01A8.1 /REP_DB=WormBase Gene ID /WP=CE00275 /TR=SW:P34530 /GB=CAA81606.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066644 NCBI Caenorhabditis elegans M01A8.1 (M01A8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000016680 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9257172:9259916:1 11/11 None
SNAP00000016675 ENSEMBL cdna:SNAP chromosome:CEL140:III:9258862:9259916:1 9/11 None
M01A8.1 ENSEMBL cdna:known chromosome:CEL140:III:9258658:9259916:1 gene:M01A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9258653-9259912(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01A8.1
Entrez Gene 187349 Entrez gene
SwissProt P34530 EMBL-EBI
WormBase CE00275 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA81606 Hypothetical protein M01A8.1 [Caenorhabditis elegans] ref|NP_499045.1| M01A8.1 [Caenorhabditis elegans] sp|P34530|YM91_CAEEL Hypothetical protein M01A8.1 in chromosome III 2.0E-98
blast CAA81606 Hypothetical protein M01A8.1 [Caenorhabditis elegans] ref|NP_499045.1| M01A8.1 [Caenorhabditis elegans] sp|P34530|YM91_CAEEL Hypothetical protein M01A8.1 in chromosome III 2.0E-90
blast CAA81606 Hypothetical protein M01A8.1 [Caenorhabditis elegans] ref|NP_499045.1| M01A8.1 [Caenorhabditis elegans] sp|P34530|YM91_CAEEL Hypothetical protein M01A8.1 in chromosome III 5.0E-80
blast CAE65255 Hypothetical protein CBG10143 [Caenorhabditis briggsae] 6.0E-71
blast CAE65255 Hypothetical protein CBG10143 [Caenorhabditis briggsae] 1.0E-64
blast CAE65255 Hypothetical protein CBG10143 [Caenorhabditis briggsae] 3.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016680 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:187060_AT
agacacaactcaaagcgacaccgatgtcatatacccaagagatgatccacgtgcaagcag
aagtcatcaaaactttggattcatggatcctccaccacgatatgagcaaatattcaagcg
aggaggtggtactccatcagtcatcacaaccagagaagctcctagcgtaacgagatctac
aggagatggaagtctgccgccaagttatgaacaagctgcgttaaacgctagaagagagag
tcgcccccaactgccacaaggcactctccgggaagttccgctgaccgcgattgacatgga
acaccccgccatgtcaacaccgtcttctacagttttggacatggaatccgagatcacaaa
tattacgaaccatgctcaagcatgtgtacacagatacgacgcaagtcatgccaatgaggt
tactcgaactgccgttgcagttaccacagaatccccggctccagcccaaagcacttcaaa
tgctcttccagaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACACAACTCAAAGCGACACCGAT 647 71 57 Antisense
GACACCGATGTCATATACCCAAGAG 481 357 73 Antisense
GATCCTCCACCACGATATGAGCAAA 239 417 142 Antisense
ACTCCATCAGTCATCACAACCAGAG 360 99 187 Antisense
GGAAGTCTGCCGCCAAGTTATGAAC 96 533 244 Antisense
AACGCTAGAAGAGAGAGTCGCCCCC 678 141 280 Antisense
CCGCTGACCGCGATTGACATGGAAC 391 263 334 Antisense
TCAACACCGTCTTCTACAGTTTTGG 678 629 370 Antisense
AATGAGGTTACTCGAACTGCCGTTG 551 161 469 Antisense
TGCCGTTGCAGTTACCACAGAATCC 317 583 486 Antisense
GCACTTCAAATGCTCTTCCAGAACT 612 313 527 Antisense
Sequence Source Affymetrix Proprietary Database