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[187059_at]

Description Y57A10A.18 /REP_DB=WormBase Gene ID /WP=CE25502 /TR=Q9U207 /GB=CAB60772.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      6grp_total > 16      4grp_total > 39      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 509
1 2 3 4 range
A 921.4
(3)
P 		503.7
(-2)
A 		422
(-3)
M 		661.3
(-0.1)
P 		499
B 795.8
(3)
P 		495.2
(-1.7)
A 		412.1
(-3)
P 		556.4
(-0.7)
P 		384
C 812.5
(3)
P 		523.4
(-1.9)
A 		461.2
(-3)
P 		586.4
(-0.9)
P 		351
avr 843.2
(3) 		507.4
(-1.9) 		431.8
(-3) 		601.4
(-0.5) 		411

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 830
1 2 3 4 5 6 range
A 788.1
(3)
P 		742.5
(2.5)
P 		285.8
(-3)
P 		511.7
(-0.3)
P 		506.3
(-0.4)
P 		598
(0.7)
P 		502
B 746
(3)
P 		564.2
(0.3)
P 		377.8
(-2.6)
M 		408.2
(-2.1)
A 		349
(-3)
P 		440
(-1.6)
P 		397
C 1115.3
(3)
P 		564.7
(-1.6)
P 		638.1
(-1)
P 		433.6
(-2.7)
P 		606.5
(-1.3)
P 		399.1
(-3)
P 		716
avr 883.1
(3) 		623.8
(-0.5) 		433.9
(-3) 		451.2
(-2.8) 		487.3
(-2.3) 		479
(-2.4) 		449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 335.5
(3)
P 		109.3
(-2.7)
A 		110.3
(-2.7)
M 		96.8
(-3)
P 		239
B 253.8
(3)
P 		122.3
(-2)
A 		95.5
(-3)
P 		118.6
(-2.1)
P 		158
C 269
(3)
P 		150.5
(-1.2)
A 		160.7
(-0.8)
P 		98.9
(-3)
P 		170
avr 286.1
(3) 		127.4
(-2.3) 		122.2
(-2.4) 		104.8
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 145.3
(-0.5)
P 		264.1
(3)
P 		62.3
(-3)
P 		129.8
(-1)
P 		152.8
(-0.3)
P 		145.6
(-0.5)
P 		202
B 259.6
(3)
P 		187.8
(0.4)
P 		91.7
(-3)
M 		108.1
(-2.4)
A 		141.8
(-1.2)
P 		164.1
(-0.4)
P 		168
C 413.4
(3)
P 		172.3
(-1.4)
P 		162.4
(-1.6)
P 		87.2
(-3)
P 		196.3
(-1)
P 		133.6
(-2.1)
P 		326
avr 272.8
(3) 		208.1
(0.7) 		105.5
(-3) 		108.4
(-2.9) 		163.6
(-0.9) 		147.8
(-1.5) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3337
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.18 NCBI
Target Description Y57A10A.18 /REP_DB=WormBase Gene ID /WP=CE25502 /TR=Q9U207 /GB=CAB60772.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064193 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-87) (pqn-87) mRNA, complete cds. 11/11 None
SNAP00000026024 ENSEMBL cdna:SNAP chromosome:CEL140:II:12202355:12221536:-1 11/11 None
GENEFINDER00000026064 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12209914:12220521:-1 11/11 None
Y57A10A.18 ENSEMBL cdna:known chromosome:CEL140:II:12209042:12221691:-1 gene:Y57A10A.18 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12209587-12221533(-) 98.38 99.89
Public Domain and Genome References
Gene Title
Gene Symbol pqn-87
Ensembl Y57A10A.18
Entrez Gene 174861 Entrez gene
SwissProt Q9U207 EMBL-EBI
WormBase CE35684 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60772 Hypothetical protein Y57A10A.18 [Caenorhabditis elegans] ref|NP_496594.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-87) [Caenorhabditis elegans] 0.0
blast T31638 hypothetical protein Y57A10A.p - Caenorhabditis elegans 0.0
blast CAE73470 Hypothetical protein CBG20921 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 9.89999961853027
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 9.80000019073486
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.810000002384186
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.620000004768372
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.479999989271164
Pfam IPR002083 EMBL-EBI MATH 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:187059_AT
gggaatctcggagatcttcgtccaccatcgtcaaatgagtttaattcgtcgatggattcg
ttccagaaggatatttgggcggcgaatggaaatggaaatggaagtcttggttctgacttt
ttgaggggctctcaaaactcaatggcaagtggattgagctcaactggtgctccacagcaa
cagcagcaacaagctccaccacaaccatcatatcttcgttcacaatcaagtcaatctcaa
cctcagcagcaacagcagcaacaggcttcaatgtcaatgagccaggcgacttatcagcaa
caacatcaacagcagaatcaaatgcaccatcatcatcagacaagtcgaatgcaacgtgga
tatggagatttgtggaatgcggcgcctggaatgcaacagcagcaacagaactcttctcaa
caagattatccgaatcgtatgatggctcctcagcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAATCTCGGAGATCTTCGTCCAC 671 493 4015 Antisense
TTCGTCCACCATCGTCAAATGAGTT 319 695 4031 Antisense
TGGTTCTGACTTTTTGAGGGGCTCT 182 551 4122 Antisense
GGGGCTCTCAAAACTCAATGGCAAG 532 497 4139 Antisense
TTGAGCTCAACTGGTGCTCCACAGC 177 705 4168 Antisense
AACCATCATATCTTCGTTCACAATC 67 149 4217 Antisense
TGAGCCAGGCGACTTATCAGCAACA 329 569 4292 Antisense
GCACCATCATCATCAGACAAGTCGA 686 313 4338 Antisense
CGGCGCCTGGAATGCAACAGCAGCA 56 243 4394 Antisense
GCAGCAACAGAACTCTTCTCAACAA 266 313 4413 Antisense
AATCGTATGATGGCTCCTCAGCACA 148 169 4447 Antisense
Sequence Source Affymetrix Proprietary Database