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[187057_at]

Description Y53G8AR.1 /REP_DB=WormBase Gene ID /WP=CE25426 /TR=Q9N3F5 /GB=AAF59547.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 73.6
(1.9)
A 		64.9
(-1.5)
A 		61.2
(-3)
A 		76.4
(3)
A 		15
B 60.9
(-3)
A 		77.8
(3)
A 		76.6
(2.6)
A 		70
(0.2)
A 		17
C 99.3
(0.6)
A 		62.8
(-3)
A 		123.9
(3)
P 		119.6
(2.6)
A 		61
avr 77.9
(-0.2) 		68.5
(-3) 		87.2
(2.6) 		88.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 112.6
(3)
A 		37.3
(-2.9)
A 		67.2
(-0.6)
P 		60.6
(-1.1)
A 		36.3
(-3)
A 		78.4
(0.3)
A 		76
B 28.2
(-3)
A 		95.1
(3)
A 		75.6
(1.3)
P 		74
(1.1)
A 		49.9
(-1.1)
A 		76.5
(1.3)
A 		67
C 57.1
(-1.9)
A 		98.6
(3)
A 		53.4
(-2.4)
A 		78
(0.6)
A 		48.1
(-3)
A 		70.2
(-0.4)
P 		51
avr 66
(1) 		77
(3) 		65.4
(0.8) 		70.9
(1.9) 		44.8
(-3) 		75
(2.6) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 26.8
(3)
A 		14.1
(-1.9)
A 		16
(-1.2)
A 		11.2
(-3)
A 		16
B 19.4
(3)
A 		19.2
(2.7)
A 		17.8
(0.9)
A 		14.9
(-3)
A 		5
C 32.9
(0.5)
A 		18.1
(-3)
A 		43.2
(3)
P 		20.2
(-2.5)
A 		25
avr 26.4
(3) 		17.1
(-2.1) 		25.7
(2.6) 		15.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 20.8
(3)
A 		13.3
(-1.5)
A 		14.6
(-0.8)
P 		15.4
(-0.3)
A 		10.9
(-3)
A 		19.1
(2)
A 		10
B 9.8
(-3)
A 		31.7
(3)
A 		18.3
(-0.7)
P 		19.6
(-0.3)
A 		20.3
(-0.1)
A 		28.5
(2.1)
A 		22
C 21.2
(-0.2)
A 		30.1
(3)
A 		13.6
(-3)
A 		15.7
(-2.2)
A 		15.6
(-2.3)
A 		23.5
(0.6)
P 		17
avr 17.3
(-1.9) 		25
(3) 		15.5
(-3) 		16.9
(-2.1) 		15.6
(-2.9) 		23.7
(2.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8011
Sequence Type Exemplar sequence
Representative Public ID Y53G8AR.1 NCBI
Target Description Y53G8AR.1 /REP_DB=WormBase Gene ID /WP=CE25426 /TR=Q9N3F5 /GB=AAF59547.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065291 NCBI Caenorhabditis elegans Y53G8AR.1 (Y53G8AR.1) mRNA, complete cds. 11/11 None
SNAP00000011804 ENSEMBL cdna:SNAP chromosome:CEL140:III:3333025:3333946:1 11/11 None
GENEFINDER00000011810 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3333025:3333946:1 11/11 None
Y53G8AR.1 ENSEMBL cdna:known chromosome:CEL140:III:3333025:3333946:1 gene:Y53G8AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3333024-3333946(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AR.1
Entrez Gene 190240 Entrez gene
SwissProt Q9N3F5 EMBL-EBI
WormBase CE25426 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59547 Hypothetical protein Y53G8AR.1 [Caenorhabditis elegans] ref|NP_497692.1| Y53G8AR.1 [Caenorhabditis elegans] 1.0E-111
blast AAK18966 Hypothetical protein H34I24.1 [Caenorhabditis elegans] ref|NP_497629.1| H34I24.1 [Caenorhabditis elegans] 2.0E-19
blast CAA21609 Hypothetical protein Y43F8C.5 [Caenorhabditis elegans] ref|NP_507805.1| Y43F8C.5 [Caenorhabditis elegans] 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:187057_AT
ggatatcacgactctctttattcatataatcttacacttgatggcctactgactgaaata
attgaagagtctgaagaagaaatgcagaaagcgttgaatgagaaaaaaacgctttgccaa
gataaggatggtgttaatggattttgtcccgaccatatcaatcccgaaccaaaagccgtt
agctgtgattatgtatgctatggatattgcacaaaatatgatttaacatgctatttgact
ccgacaagcaacacggcctggtggaagaaccaaacaatcggagaaccaggatccgcctgc
gacccagaccggtacaatattgatggtctctgctctttgaatcctccaaccactaccaca
actactacagtgaaaccgcctccagctaccccgaagccagccaaggagaaggatccgaaa
aaggcggatggatcctcggatgatggagatggtggagatctaaaatctaaggaatctgga
aatgctgactcgtcttgtgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATCACGACTCTCTTTATTCAT 201 511 262 Antisense
CTTACACTTGATGGCCTACTGACTG 351 221 292 Antisense
ATTTTGTCCCGACCATATCAATCCC 586 13 402 Antisense
ATCCCGAACCAAAAGCCGTTAGCTG 314 37 422 Antisense
TTTAACATGCTATTTGACTCCGACA 53 673 483 Antisense
CCGACAAGCAACACGGCCTGGTGGA 115 263 502 Antisense
CTGCGACCCAGACCGGTACAATATT 24 237 558 Antisense
ATATTGATGGTCTCTGCTCTTTGAA 105 19 578 Antisense
CAACTACTACAGTGAAACCGCCTCC 121 189 620 Antisense
TACCCCGAAGCCAGCCAAGGAGAAG 651 645 648 Antisense
GGAAATGCTGACTCGTCTTGTGCCA 441 527 739 Antisense
Sequence Source Affymetrix Proprietary Database