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[187056_s_at]

Description F56D12.6A /REP_DB=WormBase Gene ID /WP=CE23782 /TR=Q9TXS0 /GB=AAD47126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_high_8_8 > 08      6grp_highest_nonorm > 80      6grp_total > 38      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 291.2
(3)
P 		159.3
(-3)
P 		158.2
(-3)
P 		209.7
(-0.7)
M 		133
B 290.9
(3)
P 		127.1
(-3)
P 		171.9
(-1.4)
P 		209
(0)
P 		164
C 268.8
(3)
P 		214
(-1.7)
P 		198.4
(-3)
P 		252.7
(1.6)
P 		70
avr 283.6
(3) 		166.8
(-3) 		176.2
(-2.5) 		223.8
(-0.1) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 283
(3)
P 		239.1
(1.2)
P 		132.9
(-3)
P 		194.1
(-0.6)
P 		205.9
(-0.1)
P 		261.3
(2.1)
P 		150
B 255.3
(3)
P 		203.9
(0.1)
P 		253.9
(2.9)
P 		149.9
(-3)
P 		240.1
(2.1)
P 		233.6
(1.8)
P 		105
C 283.5
(3)
P 		211.5
(-1.3)
P 		183.2
(-3)
P 		242.2
(0.5)
P 		219
(-0.9)
P 		244.2
(0.6)
P 		100
avr 273.9
(3) 		218.2
(-1) 		190
(-3) 		195.4
(-2.6) 		221.7
(-0.7) 		246.4
(1) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 106
(3)
P 		34.6
(-2.7)
P 		41.3
(-2.2)
P 		30.7
(-3)
M 		75
B 92.8
(3)
P 		31.4
(-3)
P 		39.8
(-2.2)
P 		44.5
(-1.7)
P 		61
C 89
(3)
P 		61.5
(-0.6)
P 		69.2
(0.4)
P 		42.6
(-3)
P 		46
avr 95.9
(3) 		42.5
(-2.7) 		50.1
(-1.9) 		39.3
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 52.2
(-0.5)
P 		85
(3)
P 		29
(-3)
P 		49.2
(-0.8)
P 		62.1
(0.5)
P 		63.6
(0.7)
P 		56
B 88.8
(2.1)
P 		67.9
(-0.1)
P 		61.7
(-0.7)
P 		39.7
(-3)
P 		97.6
(3)
P 		87.1
(1.9)
P 		58
C 105.1
(3)
P 		64.5
(-1.2)
P 		46.6
(-3)
P 		48.7
(-2.8)
P 		70.9
(-0.5)
P 		81.8
(0.6)
P 		59
avr 82
(3) 		72.5
(1.4) 		45.8
(-3) 		45.9
(-3) 		76.9
(2.2) 		77.5
(2.3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187056_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4774
Sequence Type Exemplar sequence
Representative Public ID F56D12.6A NCBI
Target Description F56D12.6A /REP_DB=WormBase Gene ID /WP=CE23782 /TR=Q9TXS0 /GB=AAD47126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061546(11), NM_061547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061546 NCBI Caenorhabditis elegans F56D12.6a (F56D12.6) mRNA, complete cds. 11/11 A 
NM_061547 NCBI Caenorhabditis elegans F56D12.6b (F56D12.6) mRNA, complete cds. 11/11 A 
SNAP00000013796 ENSEMBL cdna:SNAP chromosome:CEL140:II:1311270:1322567:1 11/11 None
GENEFINDER00000013810 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1311270:1320260:1 11/11 None
F56D12.6a ENSEMBL cdna:known chromosome:CEL140:II:1310541:1320431:1 gene:F56D12.6 11/11 None
F56D12.6b ENSEMBL cdna:known chromosome:CEL140:II:1311220:1320260:1 gene:F56D12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1310584-1320259(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56D12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47126 Hypothetical protein F56D12.6a [Caenorhabditis elegans] ref|NP_493947.1| F56D12.6a [Caenorhabditis elegans] 0.0
blast AAB66120 Hypothetical protein F56D12.6b [Caenorhabditis elegans] ref|NP_493948.1| F56D12.6b [Caenorhabditis elegans] 0.0
blast CAE62915 Hypothetical protein CBG07108 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006861 EMBL-EBI Hyaluronan/mRNA binding protein 2.9E-71
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 0.0022
Sequence
Target Sequence 
>C. ELEGANS:187056_S_AT
gcacagaagctcgcgaagccggatgcggcatttgtgaacgcggaggtcgcgcggttcgaa
atggagccgacggcaccgtgtaatatggttccgccgctattcctgacgtcgtactggaaa
ttcgaacctggacacactgatctccgtgtcgactatcgcctcaactcagaatcttccatc
tcggcgccacttctcaacgtgaatttcagcacaaatttgacgggaagcgtggattctgtg
atgtgtgagccagaagccaaatgggtggctggaaatccgtcactcggctggaatttgctg
gaaatttcaagaaatggagatgtgcacggatcgctgaaagcaaggatatttatgaagaat
tctggggacgaagtaagcttggaaatgctcgatcggaagccggcgcaggtcttcgtgcaa
tttcagtgcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAGAAGCTCGCGAAGCCGGATG 515 317 2368 Antisense
TGAACGCGGAGGTCGCGCGGTTCGA 583 571 2402 Antisense
GGTTCGAAATGGAGCCGACGGCACC 305 507 2420 Antisense
GCACCGTGTAATATGGTTCCGCCGC 560 315 2440 Antisense
CGCTATTCCTGACGTCGTACTGGAA 452 253 2462 Antisense
AACCTGGACACACTGATCTCCGTGT 539 147 2492 Antisense
GCGCCACTTCTCAACGTGAATTTCA 673 287 2551 Antisense
ATGGGTGGCTGGAAATCCGTCACTC 21 51 2628 Antisense
CCGTCACTCGGCTGGAATTTGCTGG 474 263 2644 Antisense
AAATGCTCGATCGGAAGCCGGCGCA 398 119 2750 Antisense
GGTCTTCGTGCAATTTCAGTGCCTG 416 503 2775 Antisense
Sequence Source Affymetrix Proprietary Database