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[187054_at]

Description Y53G8AR.7 /REP_DB=WormBase Gene ID /WP=CE26167 /TR=Q9N3G2 /GB=AAF59542.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_total > 47      4grp_total > 23      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 447.9
(3)
P 		323.2
(-0.5)
P 		231.9
(-3)
P 		436.4
(2.7)
P 		216
B 498.4
(3)
P 		224.7
(-3)
P 		249.7
(-2.5)
P 		444.8
(1.8)
P 		274
C 460.4
(3)
P 		207.3
(-3)
P 		290.6
(-1)
P 		374.9
(1)
P 		253
avr 468.9
(3) 		251.7
(-3) 		257.4
(-2.8) 		418.7
(1.6) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 243.3
(3)
P 		191.6
(0.1)
P 		137.9
(-3)
P 		204.6
(0.8)
P 		195.1
(0.3)
P 		215.8
(1.4)
P 		105
B 188.9
(-0.4)
P 		248.2
(1.9)
P 		122.5
(-3)
P 		275
(3)
P 		178.9
(-0.8)
P 		212.9
(0.6)
P 		153
C 245.5
(3)
P 		243.5
(2.9)
P 		204.7
(-0)
A 		228.5
(1.7)
P 		165.2
(-3)
P 		224.6
(1.4)
P 		80
avr 225.9
(2.3) 		227.8
(2.4) 		155
(-3) 		236
(3) 		179.7
(-1.2) 		217.8
(1.7) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 163.1
(3)
P 		70.2
(-2.4)
P 		60.6
(-3)
P 		63.9
(-2.8)
P 		103
B 158.9
(3)
P 		55.5
(-3)
P 		57.9
(-2.9)
P 		94.8
(-0.7)
P 		103
C 152.4
(3)
P 		59.6
(-3)
P 		101.3
(-0.3)
P 		63.2
(-2.8)
P 		93
avr 158.1
(3) 		61.8
(-3) 		73.3
(-2.3) 		74
(-2.2) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 44.9
(-0.7)
P 		68.1
(3)
P 		30
(-3)
P 		51.9
(0.4)
P 		58.9
(1.6)
P 		52.5
(0.5)
P 		38
B 65.7
(1.1)
P 		82.6
(3)
P 		29.7
(-3)
P 		72.8
(1.9)
P 		72.7
(1.9)
P 		79.4
(2.6)
P 		53
C 91
(3)
P 		74.3
(0.8)
P 		52.1
(-2.2)
A 		46
(-3)
P 		53.5
(-2)
P 		75.2
(0.9)
P 		45
avr 67.2
(1.8) 		75
(3) 		37.3
(-3) 		56.9
(0.1) 		61.7
(0.9) 		69
(2) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7101
Sequence Type Exemplar sequence
Representative Public ID Y53G8AR.7 NCBI
Target Description Y53G8AR.7 /REP_DB=WormBase Gene ID /WP=CE26167 /TR=Q9N3G2 /GB=AAF59542.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027732 NCBI Caenorhabditis elegans Y53G8AR.7a (Y53G8AR.7) mRNA, complete cds. 11/11 None
GENEFINDER00000011811 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3282299:3290180:1 11/11 None
Y53G8AR.7a ENSEMBL cdna:known chromosome:CEL140:III:3282297:3290190:1 gene:Y53G8AR.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027733 3/11 Cross Hyb Matching Probes None
SNAP00000011800 8/11 Cross Hyb Matching Probes None
Y53G8AR.7b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
190242 2 1 NM_001027732 187054_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3282298-3290115(+) 99.6 100.0
Public Domain and Genome References
Ensembl Y53G8AR.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59542 Hypothetical protein Y53G8AR.7a [Caenorhabditis elegans] ref|NP_001022903.1| Y53G8AR.7a [Caenorhabditis elegans] 0.0
blast CAE69479 Hypothetical protein CBG15681 [Caenorhabditis briggsae] 0.0
blast AAF59542 Hypothetical protein Y53G8AR.7a [Caenorhabditis elegans] ref|NP_001022903.1| Y53G8AR.7a [Caenorhabditis elegans] 1.0E-136
blast CAE69479 Hypothetical protein CBG15681 [Caenorhabditis briggsae] 1.0E-122
blast CAB01247 Hypothetical protein W05E10.1 [Caenorhabditis elegans] ref|NP_505957.1| W05E10.1 [Caenorhabditis elegans] 5.0E-73
blast AAP40516 Hypothetical protein Y53G8AR.7b [Caenorhabditis elegans] ref|NP_001022904.1| Y53G8AR.7b [Caenorhabditis elegans] 8.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022903.1 12 48-70,85-107,116-138,148-167,180-202,222-241,267-289,309-329,342-364,403-425,446-468,472-491
Y53G8AR.7a 12 48-70,85-107,116-138,148-167,180-202,222-241,267-289,309-329,342-364,403-425,446-468,472-491
GENEFINDER00000011811 10 48-70,85-107,116-138,148-167,180-202,284-306,332-354,374-394,407-429,468-490
Sequence
Target Sequence 
>C. ELEGANS:187054_AT
caaccttgaaaccatcggttccctgtacgctaagatgatgtggggatggacaaatgcgca
agctgtagagtacacaggtattttacaagctgtgaatgggctggtgggagtgctggttta
tgccctttttgcagtaaaacttggagattacatttcccaggctcgcgagcggattttcac
aattttcggtttagcactaggagtactgtaccatgtggtcacatatccatatccatgggg
ccccgatttgaagtacaccaccataaatgtgacaattcacggaaaaaatcaaactgaaga
tttgggatgtaatccggcaaaatatcattggtgtacttatactaaggatgtgaatttctg
gctttacgcctcaatgtatggaattgtgctcgctgcctgctttcctatcgtcaatatttg
tatgaatacactattcagcaaaattttaggagctaggagacagatcctgacactatcaat
aactgcaattttctggatgatattctatcgccgaatgaagccactggactcgaatccaaa
gcttgcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCTTGAAACCATCGGTTCCCTG 523 185 930 Antisense
TCGGTTCCCTGTACGCTAAGATGAT 141 605 944 Antisense
GGGAGTGCTGGTTTATGCCCTTTTT 692 493 1035 Antisense
TGGAGATTACATTTCCCAGGCTCGC 691 549 1071 Antisense
CAGGCTCGCGAGCGGATTTTCACAA 491 207 1087 Antisense
CACATATCCATATCCATGGGGCCCC 292 195 1149 Antisense
TGGGGCCCCGATTTGAAGTACACCA 542 549 1165 Antisense
GAATTTCTGGCTTTACGCCTCAATG 524 325 1281 Antisense
ATGTATGGAATTGTGCTCGCTGCCT 647 47 1303 Antisense
CTATCGCCGAATGAAGCCACTGGAC 158 225 1434 Antisense
GGACTCGAATCCAAAGCTTGCACCA 175 525 1455 Antisense
Sequence Source Affymetrix Proprietary Database