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[187053_at]

Description C07A9.9 /REP_DB=WormBase Gene ID /WP=CE00493 /TR=SW:P34320 /GB=CAA82345.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 19      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 580
1 2 3 4 range
A 692.3
(3)
P 		249.8
(-1.9)
P 		154.7
(-3)
P 		524.4
(1.1)
P 		538
B 648.6
(3)
P 		235.5
(-2.5)
P 		200.5
(-3)
P 		467.7
(0.6)
P 		448
C 731.8
(3)
P 		261.9
(-1.9)
P 		152.3
(-3)
P 		564.1
(1.3)
P 		580
avr 690.9
(3) 		249.1
(-2.1) 		169.2
(-3) 		518.7
(1) 		522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 389.6
(3)
P 		314.8
(0.4)
P 		217.8
(-3)
P 		245.8
(-2)
P 		270.9
(-1.1)
P 		222.6
(-2.8)
P 		172
B 550.9
(3)
P 		205.2
(-3)
P 		231.3
(-2.5)
P 		257.9
(-2.1)
P 		231.9
(-2.5)
P 		312.8
(-1.1)
P 		346
C 407.3
(3)
P 		247.2
(-0.7)
P 		147.5
(-3)
P 		376.2
(2.3)
P 		245.7
(-0.7)
P 		377.1
(2.3)
P 		260
avr 449.3
(3) 		255.7
(-1.6) 		198.9
(-3) 		293.3
(-0.7) 		249.5
(-1.8) 		304.2
(-0.5) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 252.1
(3)
P 		54.2
(-2.6)
P 		40.4
(-3)
P 		76.8
(-2)
P 		212
B 206.8
(3)
P 		58.2
(-2.6)
P 		46.5
(-3)
P 		99.7
(-1)
P 		160
C 242.3
(3)
P 		75.3
(-2.3)
P 		53.1
(-3)
P 		95.1
(-1.7)
P 		189
avr 233.7
(3) 		62.6
(-2.5) 		46.7
(-3) 		90.5
(-1.6) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 71.8
(-0.7)
P 		112
(3)
P 		47.4
(-3)
P 		62.3
(-1.6)
P 		81.7
(0.2)
P 		54.2
(-2.4)
P 		65
B 191.7
(3)
P 		68.3
(-2.5)
P 		56.2
(-3)
P 		68.3
(-2.5)
P 		94.2
(-1.3)
P 		116.6
(-0.3)
P 		136
C 151
(3)
P 		75.4
(-1)
P 		37.5
(-3)
P 		75.6
(-1)
P 		79.5
(-0.8)
P 		126.2
(1.7)
P 		114
avr 138.2
(3) 		85.2
(-0.5) 		47
(-3) 		68.7
(-1.6) 		85.1
(-0.5) 		99
(0.4) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8049
Sequence Type Exemplar sequence
Representative Public ID C07A9.9 NCBI
Target Description C07A9.9 /REP_DB=WormBase Gene ID /WP=CE00493 /TR=SW:P34320 /GB=CAA82345.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066736 NCBI Caenorhabditis elegans C07A9.9 (C07A9.9) mRNA, complete cds. 11/11 None
GENEFINDER00000039338 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9662996:9667488:-1 10/11 None
C07A9.9 ENSEMBL cdna:known chromosome:CEL140:III:9662996:9665087:-1 gene:C07A9.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039320 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9662991-9665083(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07A9.9
Entrez Gene 182357 Entrez gene
SwissProt P34320 EMBL-EBI
WormBase CE00493 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82345 Hypothetical protein C07A9.9 [Caenorhabditis elegans] ref|NP_499137.1| C07A9.9 [Caenorhabditis elegans] sp|P34320|YKT9_CAEEL Hypothetical protein C07A9.9 in chromosome III 3.0E-87
blast CAA82345 Hypothetical protein C07A9.9 [Caenorhabditis elegans] ref|NP_499137.1| C07A9.9 [Caenorhabditis elegans] sp|P34320|YKT9_CAEEL Hypothetical protein C07A9.9 in chromosome III 2.0E-81
blast CAE65155 Hypothetical protein CBG10023 [Caenorhabditis briggsae] 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:187053_AT
gggtgacgattgctcggatcattcctccttatgcaaacattgctgctacgaaatgatacg
tgattcgattaaagactacaaaagcggtccattatatgcacgatgtccacaatgcttccg
caatatatcttcattgacacggcggaaacgtcgactgacaagtgaaggacacgacgagaa
ctgcccagcccctatggtccctatggttaacgctgaacattcaatttcactttgtgacta
cacgacatccatgatgggtggaggacaagtgaataagggatttgaatcttcaagctcact
ttttctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGACGATTGCTCGGATCATTCC 560 497 15 Antisense
GGATCATTCCTCCTTATGCAAACAT 470 511 30 Antisense
AAAGCGGTCCATTATATGCACGATG 287 123 95 Antisense
TATGCACGATGTCCACAATGCTTCC 578 655 109 Antisense
CAATGCTTCCGCAATATATCTTCAT 433 181 124 Antisense
ATATCTTCATTGACACGGCGGAAAC 637 19 139 Antisense
GAAGGACACGACGAGAACTGCCCAG 562 333 178 Antisense
CCCTATGGTCCCTATGGTTAACGCT 305 259 204 Antisense
GAACATTCAATTTCACTTTGTGACT 266 351 229 Antisense
GTGACTACACGACATCCATGATGGG 680 481 248 Antisense
GAATCTTCAAGCTCACTTTTTCTGT 255 329 298 Antisense
Sequence Source Affymetrix Proprietary Database