[Home] | [Total List]

[187052_at]

Description Y53G8AR.2 /REP_DB=WormBase Gene ID /WP=CE26165 /TR=Q9N3F6 /GB=AAF59546.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 63      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 88.4
(3)
A 		69.5
(1.3)
A 		49.4
(-0.5)
A 		22.3
(-3)
A 		66
B 76.1
(3)
A 		48.1
(-3)
A 		61
(-0.2)
A 		54.5
(-1.6)
A 		28
C 74.2
(-1.9)
A 		66
(-3)
A 		109.6
(3)
A 		93.2
(0.7)
P 		44
avr 79.6
(3) 		61.2
(-1.8) 		73.3
(1.3) 		56.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 81.4
(2.7)
A 		62.2
(-2)
A 		69.3
(-0.3)
A 		60.8
(-2.4)
A 		58.2
(-3)
A 		82.6
(3)
A 		24
B 94.8
(2.6)
A 		100.2
(3)
A 		8
(-3)
A 		45.2
(-0.6)
A 		86.7
(2.1)
A 		47.5
(-0.4)
A 		92
C 128.2
(3)
P 		86
(-0.1)
A 		97.3
(0.8)
A 		86.6
(-0)
A 		54.1
(-2.4)
A 		45.3
(-3)
A 		83
avr 101.5
(3) 		82.8
(0.4) 		58.2
(-3) 		64.2
(-2.2) 		66.3
(-1.9) 		58.5
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 32.2
(3)
A 		15.1
(-0.6)
A 		12.9
(-1)
A 		3.3
(-3)
A 		29
B 24.3
(3)
A 		11.9
(-2.9)
A 		14.1
(-1.8)
A 		11.6
(-3)
A 		13
C 24.6
(-0.6)
A 		19
(-2.1)
A 		38.2
(3)
A 		15.7
(-3)
P 		23
avr 27
(3) 		15.3
(-1.2) 		21.7
(1.1) 		10.2
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 15
(-3)
A 		22.1
(3)
A 		15.1
(-2.9)
A 		15.4
(-2.7)
A 		17.5
(-0.9)
A 		20.1
(1.3)
A 		7
B 33
(2.6)
A 		33.3
(2.7)
A 		1.9
(-3)
A 		12
(-1.2)
A 		35.2
(3)
A 		17.7
(-0.2)
A 		33
C 47.5
(3)
P 		26.2
(-1)
A 		24.8
(-1.2)
A 		17.4
(-2.6)
A 		17.5
(-2.6)
A 		15.2
(-3)
A 		32
avr 31.8
(3) 		27.2
(1.5) 		13.9
(-3) 		14.9
(-2.7) 		23.4
(0.2) 		17.7
(-1.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7912
Sequence Type Exemplar sequence
Representative Public ID Y53G8AR.2 NCBI
Target Description Y53G8AR.2 /REP_DB=WormBase Gene ID /WP=CE26165 /TR=Q9N3F6 /GB=AAF59546.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065290(11), NM_181910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065290 NCBI Caenorhabditis elegans Y53G8AR.2a (Y53G8AR.2) mRNA, complete cds. 11/11 None
NM_181910 NCBI Caenorhabditis elegans Y53G8AR.2b (Y53G8AR.2) mRNA, complete cds. 11/11 None
SNAP00000011803 ENSEMBL cdna:SNAP chromosome:CEL140:III:3303458:3331346:1 11/11 None
GENEFINDER00000011812 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3322963:3331631:1 11/11 None
Y53G8AR.2a ENSEMBL cdna:known chromosome:CEL140:III:3322959:3331655:1 gene:Y53G8AR.2 11/11 A 
Y53G8AR.2b ENSEMBL cdna:known chromosome:CEL140:III:3322979:3330155:1 gene:Y53G8AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3322962-3330155(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y53G8AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59546 Hypothetical protein Y53G8AR.2a [Caenorhabditis elegans] ref|NP_497691.1| Y53G8AR.2a [Caenorhabditis elegans] 0.0
blast AAO12399 Hypothetical protein Y53G8AR.2b [Caenorhabditis elegans] ref|NP_871639.1| Y53G8AR.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.1E-10
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.1E-10
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.1E-10
Sequence
Target Sequence 
>C. ELEGANS:187052_AT
acggccggaatttcgacaggctcgtgcccatccaccaccaccaacactaacggagcccag
ttttttcggccggcggctctaatggtcacagaatttcgtcaatataacctaaagagggcc
gccgagtcgattcaacgggatttacaaatgttctcgatgctccagcgacgagagcagctc
aaaaaggagcaaatttcggcggaaaatcgacaattccacgtggcctggcagcttttacag
cggggattggctcctggagcagtacttgaagctatgaaaatttccaagtcagaaattcgg
aaatttacctctgaatcagcgaaaaattccatgttttcggtgctcgcggagcctagtttg
aagcgaaaacaccccggaatttcacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCCGGAATTTCGACAGGCTCGT 564 91 1648 Antisense
TTTCGGCCGGCGGCTCTAATGGTCA 27 659 1711 Antisense
GCCGCCGAGTCGATTCAACGGGATT 50 283 1765 Antisense
TTACAAATGTTCTCGATGCTCCAGC 603 681 1789 Antisense
GATGCTCCAGCGACGAGAGCAGCTC 598 413 1803 Antisense
TTTACAGCGGGGATTGGCTCCTGGA 42 667 1881 Antisense
GGCTCCTGGAGCAGTACTTGAAGCT 31 541 1896 Antisense
CGGAAATTTACCTCTGAATCAGCGA 89 241 1945 Antisense
AAAAATTCCATGTTTTCGGTGCTCG 500 127 1969 Antisense
GTGCTCGCGGAGCCTAGTTTGAAGC 72 479 1987 Antisense
GCGAAAACACCCCGGAATTTCACAT 499 289 2010 Antisense
Sequence Source Affymetrix Proprietary Database