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[187050_at]

Description Y53G8AR.5 /REP_DB=WormBase Gene ID /WP=CE26166 /TR=Q9N3F9 /GB=AAF59544.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 10.7
(-3)
A 		14.9
(-2.5)
A 		38.2
(0.2)
A 		61.8
(3)
A 		51
B 36.2
(-1.2)
A 		56
(3)
A 		27.8
(-3)
A 		54.7
(2.7)
A 		28
C 61.6
(2.5)
A 		9.6
(-3)
A 		31.9
(-0.6)
A 		66.1
(3)
A 		57
avr 36.2
(-1.3) 		26.8
(-3) 		32.6
(-2) 		60.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 60.6
(3)
A 		41.9
(-3)
A 		49.1
(-0.7)
A 		55.8
(1.5)
A 		44.9
(-2)
A 		47.2
(-1.3)
A 		19
B 26.7
(-3)
A 		53.2
(1.2)
A 		43.8
(-0.3)
A 		31
(-2.3)
A 		64.6
(3)
P 		40.4
(-0.8)
P 		38
C 48.6
(1.8)
A 		15.1
(-3)
A 		32
(-0.6)
A 		52.8
(2.4)
A 		37.5
(0.2)
A 		56.9
(3)
A 		42
avr 45.3
(1.2) 		36.7
(-3) 		41.6
(-0.6) 		46.5
(1.8) 		49
(3) 		48.2
(2.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.9
(-2.4)
A 		3.2
(-3)
A 		10
(3)
A 		9
(2.1)
A 		7
B 11.5
(1.1)
A 		13.8
(3)
A 		6.4
(-3)
A 		11.7
(1.3)
A 		7
C 20.4
(3)
A 		2.8
(-3)
A 		11.1
(-0.2)
A 		11.1
(-0.2)
A 		18
avr 11.9
(3) 		6.6
(-3) 		9.2
(-0.1) 		10.6
(1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.2
(-2.3)
A 		14.9
(3)
A 		10.7
(-3)
A 		14.1
(1.9)
A 		13.5
(1)
A 		11.5
(-1.9)
A 		4
B 9.3
(-2.6)
A 		17.7
(0.1)
A 		10.6
(-2.2)
A 		8.2
(-3)
A 		26.3
(3)
P 		15.1
(-0.7)
P 		18
C 18
(2.5)
A 		4.6
(-3)
A 		8.2
(-1.5)
A 		10.6
(-0.5)
A 		12.1
(0.1)
A 		19.1
(3)
A 		15
avr 12.8
(-0.6) 		12.4
(-0.9) 		9.8
(-3) 		11
(-2) 		17.3
(3) 		15.2
(1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7615
Sequence Type Exemplar sequence
Representative Public ID Y53G8AR.5 NCBI
Target Description Y53G8AR.5 /REP_DB=WormBase Gene ID /WP=CE26166 /TR=Q9N3F9 /GB=AAF59544.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065287
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011808 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3297447:3301949:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065287 7/11 Cross Hyb Matching Probes None
SNAP00000011800 7/11 Cross Hyb Matching Probes None
GENEFINDER00000031211 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031214 1/11 Cross Hyb Matching Probes None
Y53G8AR.5 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3297446-3301949(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59544 Hypothetical protein Y53G8AR.5 [Caenorhabditis elegans] ref|NP_497688.2| Y53G8AR.5 [Caenorhabditis elegans] 1.0E-100
blast CAE69482 Hypothetical protein CBG15684 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR006575 EMBL-EBI RWD 9.0E-28
Sequence
Target Sequence 
>C. ELEGANS:187050_AT
gacggaatgtttgacggggttgagacaagagattcaggatgcccagaaacatatgaagga
gcaagtggaaacggtaaaaattttggattttaggataaaaatagaggaaaataaggtgga
aattctcgaatttcccacctataaattggttgaaaatgtgaataaaaaccgtttttctgc
caacaatttgacattagagcacatttgtcactcggagatgcggaagctatgcccaaattt
tcattttttccaaaaacttaacatcttctgccctgtttgccgtgctcaactcaccgattc
caacacaattcacaactatcgggaaaatgttcaattaatgattaaaaattgtaaaaagaa
tcagaaaacgctgaaaaataagaagcggagatcaagtacgacgacggaagacgtgcaaaa
aactataaaaagatggcacgaagaacaacgaaaattgtcgaaaatctacgagaaacagaa
ggaaaaaggtggaattatcgatattgaagaggagaaaaaacgccggcaattcttcattga
aaccaccacaaatgaggagacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGAATGTTTGACGGGGTTGAGA 533 281 459 Antisense
GAGACAAGAGATTCAGGATGCCCAG 358 393 480 Antisense
ATTCTCGAATTTCCCACCTATAAAT 242 11 580 Antisense
CCGTTTTTCTGCCAACAATTTGACA 342 265 627 Antisense
GTCACTCGGAGATGCGGAAGCTATG 18 465 665 Antisense
CAAAAACTTAACATCTTCTGCCCTG 662 189 709 Antisense
CCAACACAATTCACAACTATCGGGA 368 275 758 Antisense
GCGGAGATCAAGTACGACGACGGAA 273 291 843 Antisense
GAAAAAACGCCGGCAATTCTTCATT 112 355 972 Antisense
GGCAATTCTTCATTGAAACCACCAC 4 535 983 Antisense
GAAACCACCACAAATGAGGAGACGG 396 357 997 Antisense
Sequence Source Affymetrix Proprietary Database