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[187049_at]

Description Y113G7B.15 /REP_DB=WormBase Gene ID /WP=CE23295 /TR=Q9U2X1 /GB=CAB54334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 3.9
(-3)
A 		12.5
(3)
A 		5
(-2.2)
A 		12
(2.7)
A 		9
B 17.3
(-2.2)
A 		31.3
(3)
A 		15.2
(-3)
A 		15.8
(-2.8)
A 		16
C 16.7
(3)
A 		12.1
(1.1)
A 		2.1
(-3)
A 		16.6
(3)
A 		15
avr 12.6
(-0.2) 		18.6
(3) 		7.4
(-3) 		14.8
(1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.6
(-1.6)
A 		13.7
(3)
A 		6.1
(-1.3)
A 		9.4
(0.5)
A 		3.2
(-3)
A 		9.9
(0.8)
A 		11
B 18.9
(2)
A 		22.4
(3)
A 		8.4
(-1.1)
A 		2.7
(-2.8)
A 		2.1
(-3)
A 		4.5
(-2.3)
A 		20
C 4.9
(-2.4)
A 		17.7
(3)
A 		3.6
(-3)
A 		5.3
(-2.3)
A 		5.3
(-2.3)
A 		6.6
(-1.7)
A 		14
avr 9.8
(-0.4) 		17.9
(3) 		6
(-2) 		5.8
(-2) 		3.5
(-3) 		7
(-1.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-2.6)
A 		2.7
(3)
A 		1.3
(-3)
A 		1.7
(-1.3)
A 		1
B 5.5
(-0.1)
A 		7.7
(3)
A 		3.5
(-2.9)
A 		3.4
(-3)
A 		4
C 5.5
(3)
A 		3.5
(0.5)
A 		0.7
(-3)
A 		2.8
(-0.4)
A 		5
avr 4.1
(1.9) 		4.6
(3) 		1.8
(-3) 		2.6
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-3)
A 		4.9
(3)
A 		1.3
(-2.5)
A 		2.4
(-0.8)
A 		1
(-3)
A 		2.4
(-0.8)
A 		4
B 6.6
(2.2)
A 		7.5
(3)
A 		2
(-1.9)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		1.7
(-2.1)
A 		7
C 1.8
(-1.8)
A 		5.4
(3)
A 		0.9
(-3)
A 		1.1
(-2.7)
A 		1.7
(-1.9)
A 		2.2
(-1.3)
A 		5
avr 3.1
(-0.6) 		5.9
(3) 		1.4
(-2.7) 		1.4
(-2.7) 		1.2
(-3) 		2.1
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13246
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.15 NCBI
Target Description Y113G7B.15 /REP_DB=WormBase Gene ID /WP=CE23295 /TR=Q9U2X1 /GB=CAB54334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075503 NCBI Caenorhabditis elegans Y113G7B.15 (Y113G7B.15) mRNA, complete cds. 11/11 None
SNAP00000024715 ENSEMBL cdna:SNAP chromosome:CEL140:V:20226963:20231738:-1 11/11 None
GENEFINDER00000024732 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20227019:20231738:-1 10/11 None
Y113G7B.15 ENSEMBL cdna:known chromosome:CEL140:V:20226963:20231738:-1 gene:Y113G7B.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029044 3/11 Cross Hyb Matching Probes None
SNAP00000024713 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024733 3/11 Cross Hyb Matching Probes None
Y113G7B.26 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20226962-20231738(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.15
Entrez Gene 190976 Entrez gene
SwissProt Q9U2X1 EMBL-EBI
WormBase CE23295 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54334 Hypothetical protein Y113G7B.15 [Caenorhabditis elegans] ref|NP_507904.1| Y113G7B.15 [Caenorhabditis elegans] 0.0
blast CAE67418 Hypothetical protein CBG12906 [Caenorhabditis briggsae] 1.0E-118
blast CAA16407 Hypothetical protein Y51A2D.8 [Caenorhabditis elegans] ref|NP_507627.1| Y51A2D.8 [Caenorhabditis elegans] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 2.4E-61
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 1.2E-53
Sequence
Target Sequence 
>C. ELEGANS:187049_AT
aagaacaatgcggttgctgctgggcgttcgccaccactgccatcaccgaagctgccaaca
ccctctactccaagtccttcacaagtctctcggaccaggaaatttgcgattgtgcagatt
caggagacactcctgggtgcgtgggaggtgatccaaggaacggtctgaaaatggtgcatc
tacggggacagtccagtgacggtgactacccttacgaggaatatcgggcgaataccactg
gaaattgcgtgggcgacgagaaaagtacagtaatccagccggaaactttaaatgtctatc
gatttgatcaagattatgcagaggaggatattatggagaatttgtatctcaatcatatcc
ctacagcagtttatttccgagtgggtgagaactttgaatggtacacatcaggagtacttc
aatccgaagattgttaccaaatgacaccagcggaatggcattccgtagcaattgttggtt
atggtacatcagatgacggtgtcccgtattggttggttagaaactcgtggaattccgatt
ggggtcttcatggatatgtcaagattcgacgtggtgttaactggtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAACAATGCGGTTGCTGCTGGGC 360 153 371 Antisense
CAAGTCCTTCACAAGTCTCTCGGAC 326 181 441 Antisense
GACACTCCTGGGTGCGTGGGAGGTG 88 367 496 Antisense
AAATGGTGCATCTACGGGGACAGTC 505 119 539 Antisense
AGTCCAGTGACGGTGACTACCCTTA 382 1 560 Antisense
ATCTCAATCATATCCCTACAGCAGT 234 33 716 Antisense
ACAGCAGTTTATTTCCGAGTGGGTG 125 109 733 Antisense
GGAATGGCATTCCGTAGCAATTGTT 210 533 822 Antisense
GGTACATCAGATGACGGTGTCCCGT 95 505 853 Antisense
GTGGAATTCCGATTGGGGTCTTCAT 280 489 897 Antisense
GATTCGACGTGGTGTTAACTGGTGT 555 427 933 Antisense
Sequence Source Affymetrix Proprietary Database