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[187048_at]

Description C10G11.10 /REP_DB=WormBase Gene ID /WP=CE08089 /TR=P91033 /GB=AAB42249.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 4.2
(-3)
A 		5.6
(-2.9)
A 		9
(-2.6)
A 		85.5
(3)
A 		81
B 6.7
(2.3)
A 		4.3
(-0.5)
A 		2.1
(-3)
A 		7.3
(3)
A 		5
C 5.9
(-2.9)
A 		4.7
(-3)
A 		5.5
(-2.9)
A 		99.4
(3)
A 		95
avr 5.6
(-2.9) 		4.9
(-3) 		5.5
(-2.9) 		64.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 6.4
(-2.4)
A 		25.1
(0.7)
A 		2.6
(-3)
A 		39.4
(3)
A 		11.8
(-1.5)
A 		10.7
(-1.7)
A 		37
B 3
(-2.6)
A 		3.7
(-2.4)
A 		1.7
(-3)
A 		21.2
(3)
A 		16.7
(1.6)
A 		4.4
(-2.2)
A 		20
C 6.4
(-2.3)
A 		4.1
(-2.8)
A 		3.1
(-3)
A 		8.2
(-1.8)
A 		22.9
(1.5)
A 		29.6
(3)
A 		27
avr 5.3
(-2.2) 		11
(-0.5) 		2.5
(-3) 		22.9
(3) 		17.1
(1.3) 		14.9
(0.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.5
(-2.8)
A 		1.2
(-3)
A 		2.3
(-2.4)
A 		12.5
(3)
A 		11
B 2.1
(3)
A 		1.1
(-0.8)
A 		0.5
(-3)
A 		1.6
(1.1)
A 		2
C 2
(-2.8)
A 		1.4
(-3)
A 		1.9
(-2.8)
A 		16.8
(3)
A 		15
avr 1.9
(-2.5) 		1.2
(-3) 		1.6
(-2.7) 		10.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-2.6)
A 		8.9
(2.3)
A 		0.6
(-3)
A 		10
(3)
A 		3.6
(-1.1)
A 		2.6
(-1.7)
A 		9
B 1.1
(-2.3)
A 		1.2
(-2.3)
A 		0.4
(-3)
A 		5.6
(1.9)
A 		6.8
(3)
A 		1.6
(-1.9)
A 		6
C 2.4
(-1.9)
A 		1.3
(-2.7)
A 		0.8
(-3)
A 		1.6
(-2.5)
A 		7.4
(1.4)
A 		9.9
(3)
A 		9
avr 1.6
(-1.9) 		3.8
(0.6) 		0.6
(-3) 		5.7
(2.8) 		5.9
(3) 		4.7
(1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.702
Sequence Type Exemplar sequence
Representative Public ID C10G11.10 NCBI
Target Description C10G11.10 /REP_DB=WormBase Gene ID /WP=CE08089 /TR=P91033 /GB=AAB42249.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059418 NCBI Caenorhabditis elegans C10G11.10 (C10G11.10) mRNA, complete cds. 11/11 A 
SNAP00000041164 ENSEMBL cdna:SNAP chromosome:CEL140:I:6313167:6314444:-1 10/11 None
GENEFINDER00000041171 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6313167:6315036:-1 10/11 None
C10G11.10 ENSEMBL cdna:known chromosome:CEL140:I:6313167:6314490:-1 gene:C10G11.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059419 1/11 Cross Hyb Matching Probes None
C10G11.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6313095-6314419(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G11.10
Entrez Gene 182507 Entrez gene
SwissProt P91033 EMBL-EBI
WormBase CE08089 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42249 Hypothetical protein C10G11.10 [Caenorhabditis elegans] ref|NP_491819.1| C10G11.10 [Caenorhabditis elegans] 6.0E-95
blast AAB42249 Hypothetical protein C10G11.10 [Caenorhabditis elegans] ref|NP_491819.1| C10G11.10 [Caenorhabditis elegans] 5.0E-90
blast AAB42249 Hypothetical protein C10G11.10 [Caenorhabditis elegans] ref|NP_491819.1| C10G11.10 [Caenorhabditis elegans] 7.0E-90
blast CAE60333 Hypothetical protein CBG03925 [Caenorhabditis briggsae] 2.0E-14
blast CAE60333 Hypothetical protein CBG03925 [Caenorhabditis briggsae] 3.0E-14
blast AAB42241 Hypothetical protein C10G11.1 [Caenorhabditis elegans] ref|NP_491820.2| C10G11.1 [Caenorhabditis elegans] 5.0E-13
blast AAB42241 Hypothetical protein C10G11.1 [Caenorhabditis elegans] ref|NP_491820.2| C10G11.1 [Caenorhabditis elegans] 6.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491819.1 1 5-27
C10G11.10 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:187048_AT
ttgattttaattttctgctcgtcgaaaaagaaagaaccacctcgtccaatcgcatcacag
acctcagctaatgctttagtaccacagtctagctcacaaccttcaactccaatacaagcc
cctcctatcaaaaatgaagaggatgatgatgacgttaaattcaacataaccgtcaaggca
ccagtggagaaaaaggatgagtttgaaggtgatgatgaagagaatccgttggctaaactc
gcaatcaaaacaaaacctaaaaaacctgttgatgcgcctgtgaagacacctgcgaaggct
gcacctcgaacaagaacaaaagagagtgcgattgctccggaacgtgtattcctggcgctg
aatgaaaagcagattggggtctcttgctaccaattcgagccttcacagccatcgaccatg
aacaatgctctgactaagaaacaatctgttgtcatgaaaatctcaaaagcttcagaccag
cctgcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATTTTAATTTTCTGCTCGTCGA 539 705 79 Antisense
TCGCATCACAGACCTCAGCTAATGC 321 601 128 Antisense
CAGCTAATGCTTTAGTACCACAGTC 675 203 143 Antisense
CAACCTTCAACTCCAATACAAGCCC 123 187 175 Antisense
TACAAGCCCCTCCTATCAAAAATGA 665 641 191 Antisense
TCCGTTGGCTAAACTCGCAATCAAA 476 593 303 Antisense
ACCTGTTGATGCGCCTGTGAAGACA 228 89 342 Antisense
TGAAGACACCTGCGAAGGCTGCACC 243 575 359 Antisense
AGCAGATTGGGGTCTCTTGCTACCA 658 77 446 Antisense
GCCATCGACCATGAACAATGCTCTG 100 281 486 Antisense
AAAAGCTTCAGACCAGCCTGCAGTT 532 131 543 Antisense
Sequence Source Affymetrix Proprietary Database