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[187047_at]

Description Y55B1AR.1 /REP_DB=WormBase Gene ID /WP=CE22493 /TR=Q9N384 /GB=AAF60785.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 06      6grp_total > 42      4grp_total > 60      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13202
1 2 3 4 range
A 11006.1
(1.7)
P 		13071
(2.7)
P 		13666.7
(3)
P 		1697.3
(-3)
P 		11969
B 10817.2
(1.3)
P 		11292.1
(1.6)
P 		14477.4
(3)
P 		1275
(-3)
P 		13202
C 10317.7
(2.2)
P 		10695.6
(2.4)
P 		11709.5
(3)
P 		1388.6
(-3)
P 		10321
avr 10713.7
(1.7) 		11686.2
(2.2) 		13284.5
(3) 		1453.6
(-3) 		11831

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7817
1 2 3 4 5 6 range
A 10007.5
(-0.1)
P 		9772.6
(-0.3)
P 		13819
(3)
P 		9885.7
(-0.2)
P 		7048.6
(-2.5)
P 		6422.4
(-3)
P 		7397
B 9702.7
(-0.2)
P 		10101.1
(0.1)
P 		13870.8
(3)
P 		9518.5
(-0.3)
P 		7585.4
(-1.8)
P 		6053.8
(-3)
P 		7817
C 9216.8
(-0.4)
P 		9643.4
(0.1)
P 		12549.1
(3)
P 		10741.5
(1.2)
P 		7040.7
(-2.6)
P 		6616.9
(-3)
P 		5932
avr 9642.3
(-0.2) 		9839
(-0) 		13413
(3) 		10048.6
(0.1) 		7224.9
(-2.3) 		6364.4
(-3) 		7049
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3847
1 2 3 4 range
A 4007.3
(3)
P 		2837.4
(1.1)
P 		3572.7
(2.3)
P 		248.5
(-3)
P 		3759
B 3449.5
(3)
P 		2788.9
(1.8)
P 		3354.8
(2.8)
P 		271.7
(-3)
P 		3178
C 3415.4
(2)
P 		3075.1
(1.4)
P 		4081.1
(3)
P 		234.1
(-3)
P 		3847
avr 3624.1
(2.9) 		2900.5
(1.7) 		3669.5
(3) 		251.4
(-3) 		3418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1912
1 2 3 4 5 6 range
A 1844.8
(-2.1)
P 		3475.6
(3)
P 		3009.5
(1.5)
P 		2507.2
(-0)
P 		2126.9
(-1.2)
P 		1563.7
(-3)
P 		1912
B 3376.1
(3)
P 		3362.2
(2.9)
P 		3368.2
(3)
P 		2521.1
(-1.6)
P 		3081.8
(1.4)
P 		2257.4
(-3)
P 		1119
C 3416.3
(3)
P 		2942.5
(0.7)
P 		3193.9
(1.9)
P 		2160.1
(-3)
P 		2278.3
(-2.4)
P 		2215.1
(-2.7)
P 		1256
avr 2879.1
(1.2) 		3260.1
(3) 		3190.5
(2.7) 		2396.1
(-1.2) 		2495.7
(-0.7) 		2012.1
(-3) 		1248
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8260
Sequence Type Exemplar sequence
Representative Public ID Y55B1AR.1 NCBI
Target Description Y55B1AR.1 /REP_DB=WormBase Gene ID /WP=CE22493 /TR=Q9N384 /GB=AAF60785.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064814(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064814 NCBI Caenorhabditis elegans gaLECtin family member (lec-6) (lec-6) mRNA, complete cds. 11/11 None
SNAP00000028884 ENSEMBL cdna:SNAP chromosome:CEL140:III:599598:600355:-1 11/11 None
GENEFINDER00000028892 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:599598:600355:-1 11/11 None
Y55B1AR.1.2 ENSEMBL cdna:known chromosome:CEL140:III:599506:600363:-1 gene:Y55B1AR.1 11/11 None
Y55B1AR.1.1 ENSEMBL cdna:known chromosome:CEL140:III:599508:600365:-1 gene:Y55B1AR.1 11/11 None
Y55B1AR.1.3 ENSEMBL cdna:known chromosome:CEL140:III:599508:600365:-1 gene:Y55B1AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:599597-600355(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lec-6
Ensembl Y55B1AR.1
Entrez Gene 175212 Entrez gene
SwissProt Q9N384 EMBL-EBI
WormBase CE22493 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60785 Galectin protein 6 [Caenorhabditis elegans] ref|NP_497215.1| gaLECtin family member (lec-6) [Caenorhabditis elegans] 3.0E-75
blast BAA09794.1 galectin [Caenorhabditis elegans] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 1.9E-16
Sequence
Target Sequence 
>C. ELEGANS:187047_AT
agcttccgcaacgaattcttcaacccacaaaccccagtgaacatcccagtgcaaggattc
tccaacggtgctcgcctccgtctcgttcttctcccaacatccgccgattctcgtttccac
atcaatcttcgcactccagacgacattgttcttcacttcaacgctagattcgatgaggga
gctgttgtgaacaactcgaccagcggaggaggttggcaatccgaggatcgtcacgccaat
ccattccagcagaacaagatctacactctggagtttgtgtccaacggtggaattatctcg
atcttcgtcaacggagcccacttcgctgactttgtcgagcgtactccatcccacggagtc
catctcattgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTCCGCAACGAATTCTTCAACC 100 79 37 Antisense
CCCAGTGAACATCCCAGTGCAAGGA 63 259 69 Antisense
AGTGCAAGGATTCTCCAACGGTGCT 428 59 84 Antisense
GCACTCCAGACGACATTGTTCTTCA 133 315 167 Antisense
TCTTCACTTCAACGCTAGATTCGAT 133 617 186 Antisense
TGTTGTGAACAACTCGACCAGCGGA 682 561 219 Antisense
TGGCAATCCGAGGATCGTCACGCCA 63 547 250 Antisense
CGCCAATCCATTCCAGCAGAACAAG 337 257 270 Antisense
GGTGGAATTATCTCGATCTTCGTCA 37 499 322 Antisense
CCCACTTCGCTGACTTTGTCGAGCG 532 257 353 Antisense
TCCCACGGAGTCCATCTCATTGAGA 653 597 385 Antisense
Sequence Source Affymetrix Proprietary Database