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[187045_at]

Description Y57G11C.14 /REP_DB=WormBase Gene ID /WP=CE14952 /TR=O18238 /GB=CAB16515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 06      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 3.4
(-3)
A 		30.1
(-1)
A 		5.1
(-2.9)
A 		82
(3)
A 		79
B 11
(-1.8)
A 		5.9
(-3)
A 		30.6
(3)
A 		13.7
(-1.1)
A 		25
C 82.2
(3)
A 		7.1
(-3)
A 		27.6
(-1.4)
A 		41.2
(-0.3)
A 		75
avr 32.2
(0.4) 		14.4
(-3) 		21.1
(-1.7) 		45.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 6.2
(-3)
A 		24.4
(-2.1)
A 		25.3
(-2)
A 		18.2
(-2.4)
A 		49.2
(-0.8)
A 		123.2
(3)
P 		117
B 5.7
(-3)
A 		16.7
(-2.6)
A 		82.8
(0)
A 		35.1
(-1.8)
A 		73.9
(-0.3)
A 		158.6
(3)
M 		153
C 8.4
(-3)
A 		14.5
(-2.8)
A 		10.1
(-2.9)
A 		57.5
(-1.3)
A 		58.9
(-1.2)
A 		178.1
(3)
M 		170
avr 6.8
(-3) 		18.5
(-2.5) 		39.4
(-1.7) 		36.9
(-1.8) 		60.7
(-0.8) 		153.3
(3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.2
(-3)
A 		6.5
(-0.1)
A 		1.3
(-2.9)
A 		12
(3)
A 		11
B 3.5
(-0.9)
A 		1.5
(-3)
A 		7.1
(3)
A 		2.9
(-1.5)
A 		6
C 27.2
(3)
A 		2
(-3)
A 		9.6
(-1.2)
A 		6.9
(-1.8)
A 		25
avr 10.6
(3) 		3.3
(-3) 		6
(-0.8) 		7.3
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 1.1
(-3)
A 		8.7
(-1.4)
A 		5.5
(-2.1)
A 		4.6
(-2.3)
A 		14.8
(-0.2)
A 		30
(3)
P 		29
B 2
(-3)
A 		5.6
(-2.6)
A 		20.1
(-1.1)
A 		9.3
(-2.2)
A 		30
(-0.1)
A 		59.1
(3)
M 		57
C 3.1
(-2.9)
A 		4.4
(-2.8)
A 		2.6
(-3)
A 		11.6
(-2.1)
A 		19.1
(-1.3)
A 		59.6
(3)
M 		57
avr 2.1
(-3) 		6.2
(-2.5) 		9.4
(-2.1) 		8.5
(-2.2) 		21.3
(-0.6) 		49.6
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10165
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.14 NCBI
Target Description Y57G11C.14 /REP_DB=WormBase Gene ID /WP=CE14952 /TR=O18238 /GB=CAB16515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070391 NCBI Caenorhabditis elegans Y57G11C.14 (Y57G11C.14) mRNA, complete cds. 11/11 None
GENEFINDER00000003614 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14800243:14800965:1 10/11 None
Y57G11C.14 ENSEMBL cdna:known chromosome:CEL140:IV:14799307:14800965:1 gene:Y57G11C.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003482 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14799312-14800971(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.14
Entrez Gene 178406 Entrez gene
SwissProt O18238 EMBL-EBI
WormBase CE14952 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16515 Hypothetical protein Y57G11C.14 [Caenorhabditis elegans] ref|NP_502792.1| Y57G11C.14 [Caenorhabditis elegans] 1.0E-121
blast CAB16515 Hypothetical protein Y57G11C.14 [Caenorhabditis elegans] ref|NP_502792.1| Y57G11C.14 [Caenorhabditis elegans] 2.0E-89
blast CAA77461 Hypothetical protein ZK637.12 [Caenorhabditis elegans] emb|CAA77475.1| Hypothetical protein ZK637.12 [Caenorhabditis elegans] ref|NP_498975.1| ZK637.12 [Caenorhabditis elegans] sp|P34658|YOUB_CAEEL Hypothetical protein ZK637.12 in chromosome III 8.0E-88
blast CAA77461 Hypothetical protein ZK637.12 [Caenorhabditis elegans] emb|CAA77475.1| Hypothetical protein ZK637.12 [Caenorhabditis elegans] ref|NP_498975.1| ZK637.12 [Caenorhabditis elegans] sp|P34658|YOUB_CAEEL Hypothetical protein ZK637.12 in chromosome III 5.0E-77
blast CAA77457 Hypothetical protein ZK637.15 [Caenorhabditis elegans] ref|NP_498973.1| ZK637.15 [Caenorhabditis elegans] 8.0E-77
blast CAA77457 Hypothetical protein ZK637.15 [Caenorhabditis elegans] ref|NP_498973.1| ZK637.15 [Caenorhabditis elegans] 2.0E-66
Sequence
Target Sequence 
>C. ELEGANS:187045_AT
gatgcaaatcccgaagcctgttgacaagaagccccgctcatcggaaaagaacctcaagct
catttcatgtgaggaaacttgtatggatgagacgctgaaaaactcgtcaaagccacgtat
tatcttcaacaaacagctcggacacgccgaatcgattgatttcgatgttccatcgctgtc
ttatgagagttcggataagggtgtcgtcgagtcgactacttcgacgtcggtgtcgaatcc
gaaaaagacgacttcttcttcgatgttcaccaagtcggaggccactacaatttcggagtt
gaccacttctacgttcaaaaaggctaagaatccatcaggtggtgctcttgtgttggataa
tcattatttgattaataatgacgatggaactgtgagcaaattgccaatgaagatctacgt
gaaacaacatctcgaagatggctctttggatgttcaacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAAATCCCGAAGCCTGTTGAC 187 413 171 Antisense
GAAGCCCCGCTCATCGGAAAAGAAC 557 343 198 Antisense
AGAACCTCAAGCTCATTTCATGTGA 707 73 218 Antisense
AACAGCTCGGACACGCCGAATCGAT 412 135 302 Antisense
GATGTTCCATCGCTGTCTTATGAGA 207 411 334 Antisense
GTCGACTACTTCGACGTCGGTGTCG 664 471 381 Antisense
CGATGTTCACCAAGTCGGAGGCCAC 450 249 431 Antisense
GTCGGAGGCCACTACAATTTCGGAG 232 471 444 Antisense
ATTTCGGAGTTGACCACTTCTACGT 307 17 460 Antisense
TCCATCAGGTGGTGCTCTTGTGTTG 539 591 501 Antisense
GATGGCTCTTTGGATGTTCAACTTG 19 407 607 Antisense
Sequence Source Affymetrix Proprietary Database