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[187044_at]

Description K04H4.5 /REP_DB=WormBase Gene ID /WP=CE00250 /TR=SW:P34507 /GB=CAA81585.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 15.5
(-3)
A 		30.7
(-1.6)
A 		75.4
(2.5)
A 		81
(3)
A 		66
B 49.3
(1.3)
A 		30.9
(-0.9)
A 		64
(3)
A 		12.6
(-3)
A 		51
C 23.7
(-2.7)
A 		59.3
(-0.3)
A 		19.5
(-3)
A 		107.4
(3)
A 		88
avr 29.5
(-3) 		40.3
(-1.3) 		53
(0.8) 		67
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 42.7
(-2.9)
A 		86.4
(-2.2)
A 		33.5
(-3)
A 		84.1
(-2.2)
A 		343.3
(1.9)
P 		413.8
(3)
P 		380
B 90.3
(-2.4)
A 		91.6
(-2.4)
A 		57.4
(-3)
A 		82
(-2.6)
A 		300.2
(1.3)
P 		392.5
(3)
P 		335
C 51.6
(-3)
A 		102.5
(-2.2)
A 		65.6
(-2.8)
A 		97.1
(-2.3)
A 		282.3
(0.7)
P 		430
(3)
P 		378
avr 61.5
(-2.8) 		93.5
(-2.3) 		52.2
(-3) 		87.7
(-2.4) 		308.6
(1.3) 		412.1
(3) 		360
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.6
(-3)
A 		6.7
(-2.5)
A 		19.7
(3)
A 		11.9
(-0.3)
A 		14
B 15.7
(3)
A 		7.6
(-0.7)
A 		14.8
(2.6)
A 		2.7
(-3)
A 		13
C 7.8
(-2.5)
A 		17
(2.4)
A 		6.8
(-3)
A 		18.1
(3)
A 		11
avr 9.7
(-3) 		10.4
(-2) 		13.8
(3) 		10.9
(-1.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 7.9
(-3)
A 		30.7
(-1.5)
A 		7.3
(-3)
A 		21.3
(-2.1)
A 		103.6
(3)
P 		100.7
(2.8)
P 		96
B 31.4
(-2.2)
A 		30.5
(-2.2)
A 		13.9
(-3)
A 		21.7
(-2.6)
A 		122
(1.9)
P 		146.4
(3)
P 		133
C 19.1
(-2.9)
A 		31.3
(-2.3)
A 		16.7
(-3)
A 		19.5
(-2.9)
A 		91.4
(0.5)
P 		144
(3)
P 		127
avr 19.5
(-2.6) 		30.8
(-2.1) 		12.6
(-3) 		20.8
(-2.6) 		105.7
(1.7) 		130.4
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7560
Sequence Type Exemplar sequence
Representative Public ID K04H4.5 NCBI
Target Description K04H4.5 /REP_DB=WormBase Gene ID /WP=CE00250 /TR=SW:P34507 /GB=CAA81585.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066659 NCBI Caenorhabditis elegans K04H4.5 (K04H4.5) mRNA, complete cds. 11/11 None
SNAP00000032560 ENSEMBL cdna:SNAP chromosome:CEL140:III:9360266:9361162:1 11/11 None
GENEFINDER00000032567 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9360266:9361162:1 11/11 None
K04H4.5 ENSEMBL cdna:known chromosome:CEL140:III:9360266:9361162:1 gene:K04H4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9360261-9361158(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04H4.5
Entrez Gene 187013 Entrez gene
SwissProt P34507 EMBL-EBI
WormBase CE00250 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA81585 Hypothetical protein K04H4.5 [Caenorhabditis elegans] ref|NP_499060.1| K04H4.5 [Caenorhabditis elegans] sp|P34507|YMV5_CAEEL Hypothetical protein K04H4.5 in chromosome III 1.0E-141
blast CAE69148 Hypothetical protein CBG15178 [Caenorhabditis briggsae] 6.0E-60
Sequence
Target Sequence 
>C. ELEGANS:187044_AT
agagccacttgtttcggattactgtggtttggagtctgacgacattccaccaatctaccg
tgctcagcttcgtgcagctcagaaggagaagatcattgcagccgaacaagcagacaaatc
tttctatgcttacgaaaagtctgatgctaatttggagggagataagaaagaagtggaagc
catcgcaccggtggattcaatgaactttgagtactacgtcccgggtttctctccgccgcc
acagaattttaacgatgacgttcaaaaaatgagcaacttccagcttcctaaaatgacatc
gattgaagctactgagaacgttttcaaaattaatggagcacacgaaaagtctcaatacgt
gttgatggaaaatgaggacccgaataaagtgaatagcccaaaaaagaccggactggaaag
cttgatttcatacactgcatcggatgttacttctacaattgcctctgaatcctcctgcct
taccgctacgcttggtccagcttttggctgccttccgatcacaagcacgtatgatcgcca
ctccgagagcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCCACTTGTTTCGGATTACTGT 331 69 141 Antisense
TGGAGTCTGACGACATTCCACCAAT 337 549 170 Antisense
AAGAAGTGGAAGCCATCGCACCGGT 131 153 308 Antisense
ATGAACTTTGAGTACTACGTCCCGG 562 21 340 Antisense
CTCCGCCGCCACAGAATTTTAACGA 535 231 371 Antisense
GCAACTTCCAGCTTCCTAAAATGAC 623 319 413 Antisense
GCTTGATTTCATACACTGCATCGGA 196 307 560 Antisense
CTTCTACAATTGCCTCTGAATCCTC 238 221 590 Antisense
TACGCTTGGTCCAGCTTTTGGCTGC 442 643 627 Antisense
TGCCTTCCGATCACAAGCACGTATG 497 583 649 Antisense
TATGATCGCCACTCCGAGAGCAAGT 101 657 670 Antisense
Sequence Source Affymetrix Proprietary Database