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[187043_at]

Description Y40B10B.1 /REP_DB=WormBase Gene ID /WP=CE21798 /TR=Q9UAX2 /GB=AAD14740.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 39      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 147.5
(3)
A 		98.4
(0.5)
A 		46.8
(-2.2)
A 		31.7
(-3)
A 		116
B 152.5
(3)
A 		5.1
(-3)
A 		13.1
(-2.7)
A 		40
(-1.6)
A 		147
C 135.9
(2.9)
A 		24.9
(-3)
A 		32.5
(-2.6)
A 		137.4
(3)
A 		113
avr 145.3
(3) 		42.8
(-2.4) 		30.8
(-3) 		69.7
(-1) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 272.7
(3)
A 		127.6
(-0.3)
A 		12.5
(-2.9)
A 		6
(-3)
A 		20.1
(-2.7)
A 		11.7
(-2.9)
A 		267
B 236.3
(3)
A 		122.4
(-0.4)
A 		62.7
(-2.2)
A 		41
(-2.8)
A 		41.4
(-2.8)
A 		35.8
(-3)
A 		201
C 241.6
(3)
P 		135.7
(0.3)
A 		12.5
(-2.8)
A 		12.5
(-2.8)
A 		28.4
(-2.4)
A 		5.5
(-3)
A 		236
avr 250.2
(3) 		128.6
(-0.1) 		29.2
(-2.7) 		19.8
(-2.9) 		30
(-2.7) 		17.7
(-3) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 53.7
(3)
A 		21.4
(-0.9)
A 		12.2
(-2.1)
A 		4.6
(-3)
A 		49
B 48.6
(3)
A 		1.2
(-3)
A 		3
(-2.8)
A 		8.5
(-2.1)
A 		47
C 45
(3)
A 		7.2
(-3)
A 		11.3
(-2.3)
A 		23.2
(-0.5)
A 		38
avr 49.1
(3) 		9.9
(-2.8) 		8.8
(-3) 		12.1
(-2.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 50.3
(3)
A 		45.4
(2.4)
A 		2.7
(-2.9)
A 		1.5
(-3)
A 		6.1
(-2.4)
A 		2.9
(-2.8)
A 		49
B 82.2
(3)
A 		40.7
(-0.5)
A 		15.2
(-2.6)
A 		10.9
(-3)
A 		16.8
(-2.5)
A 		13.3
(-2.8)
A 		71
C 89.6
(3)
P 		41.4
(-0.3)
A 		3.2
(-2.9)
A 		2.5
(-3)
A 		9.2
(-2.5)
A 		1.8
(-3)
A 		88
avr 74
(3) 		42.5
(0.3) 		7
(-2.8) 		5
(-3) 		10.7
(-2.5) 		6
(-2.9) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15064
Sequence Type Exemplar sequence
Representative Public ID Y40B10B.1 NCBI
Target Description Y40B10B.1 /REP_DB=WormBase Gene ID /WP=CE21798 /TR=Q9UAX2 /GB=AAD14740.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071137 NCBI Caenorhabditis elegans Y40B10B.1 (Y40B10B.1) mRNA, complete cds. 11/11 None
SNAP00000037988 ENSEMBL cdna:SNAP chromosome:CEL140:V:1959965:1961231:-1 11/11 None
GENEFINDER00000037991 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1959965:1961231:-1 11/11 None
Y40B10B.1 ENSEMBL cdna:known chromosome:CEL140:V:1959965:1961231:-1 gene:Y40B10B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1959964-1961231(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B10B.1
Entrez Gene 189790 Entrez gene
SwissProt Q9UAX2 EMBL-EBI
WormBase CE21798 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14740 Hypothetical protein Y40B10B.1 [Caenorhabditis elegans] ref|NP_503538.1| Y40B10B.1 [Caenorhabditis elegans] 0.0
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 1.0E-115
blast CAE68539 Hypothetical protein CBG14366 [Caenorhabditis briggsae] 7.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 2.4E-112
Sequence
Target Sequence 
>C. ELEGANS:187043_AT
cactcggccctagaaccaaagacgtgtgggtcgcaggagacactccaggatggggagaat
ggacgggtgctcaattgtgtccagaaagatacgcagtttgcggaatacaaagtcaaattg
aaggagatcaacgcggcggtgatgataccgctcttaacaatgtgaacgtagagtgttgca
aaattaccgtggcagcttgcaaccctggatactctcttgtgcgaattgcacactatgata
atagtcaaagcccaggaactgttgcccacgaggtactacgcagaatttcgatcactaaga
caactggatcgaccacaacgctttcgaattctgagaaaaatacagtttctggttctattg
gggcaagcatggcttataccgatggtcagttcactggaattgtcaatactgaacttacga
aaagctctgaaaaaatgacaactagccaactgcaaacgatggttcaggatgctattacca
atgaacgaagtgagaaagtaactttcacaatcccggcttggcaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCGGCCCTAGAACCAAAGACGT 3 199 419 Antisense
GTGGGTCGCAGGAGACACTCCAGGA 302 487 444 Antisense
GTGATGATACCGCTCTTAACAATGT 591 483 557 Antisense
AAAATTACCGTGGCAGCTTGCAACC 356 133 598 Antisense
TGGATACTCTCTTGTGCGAATTGCA 163 547 624 Antisense
TCAAAGCCCAGGAACTGTTGCCCAC 366 629 663 Antisense
TTGCCCACGAGGTACTACGCAGAAT 447 701 680 Antisense
CAACTGGATCGACCACAACGCTTTC 414 187 719 Antisense
GTTTCTGGTTCTATTGGGGCAAGCA 84 449 763 Antisense
GCAAGCATGGCTTATACCGATGGTC 357 321 781 Antisense
TTTCACAATCCCGGCTTGGCAAAAC 572 671 921 Antisense
Sequence Source Affymetrix Proprietary Database