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[187042_at]

Description Y39A3CR.7 /REP_DB=WormBase Gene ID /WP=CE25261 /TR=Q9N411 /GB=AAF60529.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 19      6grp_cgc > 49      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 15.4
(-3)
A 		61.1
(0.3)
A 		21.5
(-2.6)
A 		99
(3)
A 		84
B 14.9
(-3)
A 		50.1
(0.5)
A 		16.3
(-2.9)
A 		75.1
(3)
A 		60
C 16.7
(-2.9)
A 		56.6
(-0.7)
A 		14.5
(-3)
A 		125.2
(3)
A 		111
avr 15.7
(-3) 		55.9
(-0.1) 		17.4
(-2.9) 		99.8
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 89.1
(1.1)
A 		15.6
(-3)
A 		27.7
(-2.3)
A 		17.4
(-2.9)
A 		25.2
(-2.5)
A 		123.9
(3)
A 		108
B 18
(-2.8)
A 		14.4
(-3)
A 		17.7
(-2.8)
A 		19
(-2.8)
A 		104.2
(1.4)
A 		136.9
(3)
A 		123
C 6.7
(-3)
A 		14.4
(-2.6)
A 		17
(-2.4)
A 		25.9
(-2)
A 		75
(0.7)
A 		116.6
(3)
A 		110
avr 37.9
(-1.8) 		14.8
(-3) 		20.8
(-2.7) 		20.8
(-2.7) 		68.1
(-0.1) 		125.8
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.6
(-3)
A 		13.3
(2.2)
A 		5.6
(-3)
A 		14.5
(3)
A 		9
B 4.7
(-2.6)
A 		12.4
(1.2)
A 		3.8
(-3)
A 		16
(3)
A 		12
C 5.5
(-2.8)
A 		16.3
(1.2)
A 		5
(-3)
A 		21.1
(3)
A 		16
avr 5.3
(-2.8) 		14
(1.5) 		4.8
(-3) 		17.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 16.4
(-0.2)
A 		5.5
(-2.7)
A 		6
(-2.6)
A 		4.4
(-3)
A 		7.6
(-2.3)
A 		30.2
(3)
A 		26
B 6.3
(-2.7)
A 		4.8
(-2.9)
A 		4.3
(-3)
A 		5
(-2.9)
A 		42.4
(1.9)
A 		51.1
(3)
A 		47
C 2.5
(-3)
A 		4.4
(-2.7)
A 		4.3
(-2.7)
A 		5.2
(-2.6)
A 		24.3
(0.6)
A 		39
(3)
A 		37
avr 8.4
(-2.4) 		4.9
(-3) 		4.9
(-3) 		4.9
(-3) 		24.8
(0.4) 		40.1
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8183
Sequence Type Exemplar sequence
Representative Public ID Y39A3CR.7 NCBI
Target Description Y39A3CR.7 /REP_DB=WormBase Gene ID /WP=CE25261 /TR=Q9N411 /GB=AAF60529.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065063 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-82) (pqn-82) mRNA, complete cds. 11/11 None
GENEFINDER00000029618 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1849263:1852462:1 11/11 None
SNAP00000029611 ENSEMBL cdna:SNAP chromosome:CEL140:III:1850707:1852462:1 11/11 None
Y39A3CR.7 ENSEMBL cdna:known chromosome:CEL140:III:1849052:1852877:1 gene:Y39A3CR.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1849070-1852462(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-82
Ensembl Y39A3CR.7
Entrez Gene 175330 Entrez gene
SwissProt Q9N411 EMBL-EBI
WormBase CE29106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60529 Prion-like-(q/n-rich)-domain-bearing protein protein 82 [Caenorhabditis elegans] ref|NP_497464.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-82) [Caenorhabditis elegans] 8.0E-65
blast AAF60529 Prion-like-(q/n-rich)-domain-bearing protein protein 82 [Caenorhabditis elegans] ref|NP_497464.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-82) [Caenorhabditis elegans] 1.0E-55
blast AAF60529 Prion-like-(q/n-rich)-domain-bearing protein protein 82 [Caenorhabditis elegans] ref|NP_497464.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-82) [Caenorhabditis elegans] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:187042_AT
ctcaaaatggtgctccgatgctccgactccctgtgcatcaaattcagcaggctcaccacc
tccaacaacagcagcggcaacagatgcaacagccgatgccgagccggcgacggtctgcgg
ctcaccaagttcgccagagaattcaggctcagaatactgtccggctccaacaacaggagc
aattggctcagcagcatcaccagcaccagcagcagcatgctcaatcggagctccaacaag
ttcagcaagtgctcatcgagcaacagcagcttaaccagaattcccgcaaacgcaagcaat
ctccacaagctcactggagcgacgttgataatgtggagaatctggagaatcaggcgaccg
ccgcacaacaaattccggcaaaaaaaccgcgctggaattcggtggagcaagagcccgagc
ccgaggctccgctggaagccgtcgagcagcagcaacagaagcagccgacaactgacgggc
agcacctgccggatattgtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAAATGGTGCTCCGATGCTCCG 609 227 398 Antisense
CCGACTCCCTGTGCATCAAATTCAG 681 263 420 Antisense
ACAGATGCAACAGCCGATGCCGAGC 51 109 477 Antisense
TCAGGCTCAGAATACTGTCCGGCTC 271 623 540 Antisense
GAGCAATTGGCTCAGCAGCATCACC 310 391 574 Antisense
AGCAGCATGCTCAATCGGAGCTCCA 633 77 608 Antisense
TTAACCAGAATTCCCGCAAACGCAA 491 557 668 Antisense
GCAAACGCAAGCAATCTCCACAAGC 278 319 683 Antisense
GACCGCCGCACAACAAATTCCGGCA 506 381 753 Antisense
AGCAGCCGACAACTGACGGGCAGCA 350 77 857 Antisense
GCAGCACCTGCCGGATATTGTCAAA 387 313 876 Antisense
Sequence Source Affymetrix Proprietary Database