[Home] | [Total List]

[187041_at]

Description Y38E10A.23 /REP_DB=WormBase Gene ID /WP=CE21604 /TR=Q9NAI8 /GB=CAB54415.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 9.9
(-3)
A 		13.6
(-2.8)
A 		23.2
(-2.3)
A 		116.4
(3)
A 		107
B 40.2
(0.6)
A 		13.2
(-3)
A 		40.5
(0.6)
A 		58.2
(3)
A 		45
C 27.2
(-1.5)
A 		9.6
(-3)
A 		24.7
(-1.7)
A 		80.1
(3)
A 		71
avr 25.8
(-1.9) 		12.1
(-3) 		29.5
(-1.6) 		84.9
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 3.9
(-2.9)
A 		57.4
(3)
A 		3
(-3)
A 		6.5
(-2.6)
A 		4.1
(-2.9)
A 		5.2
(-2.8)
A 		54
B 19.7
(-0.4)
A 		15.2
(-1.2)
A 		3.4
(-3)
A 		41.7
(3)
A 		5.1
(-2.7)
A 		23.8
(0.2)
A 		38
C 26.7
(-0.5)
A 		7.1
(-3)
A 		28.4
(-0.2)
A 		47.7
(2.3)
A 		9.9
(-2.6)
A 		53.4
(3)
A 		46
avr 16.8
(-0.6) 		26.6
(1.7) 		11.6
(-1.8) 		32
(3) 		6.4
(-3) 		27.5
(1.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.6
(-2.7)
A 		3
(-3)
A 		6.1
(-1.7)
A 		17
(3)
A 		14
B 12.8
(3)
A 		3.3
(-3)
A 		9.4
(0.9)
A 		12.4
(2.7)
A 		10
C 9
(0.5)
A 		2.7
(-3)
A 		8.6
(0.3)
A 		13.5
(3)
A 		11
avr 8.5
(-0.1) 		3
(-3) 		8
(-0.3) 		14.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.7
(-3)
A 		20.4
(3)
A 		0.6
(-3)
A 		1.6
(-2.7)
A 		1.2
(-2.8)
A 		1.3
(-2.8)
A 		20
B 6.8
(0.5)
A 		5.1
(-0.5)
A 		0.8
(-3)
A 		11.1
(3)
A 		2.1
(-2.2)
A 		8.9
(1.7)
A 		10
C 9.9
(-0.1)
A 		2.2
(-3)
A 		7.2
(-1.1)
A 		9.6
(-0.2)
A 		3.2
(-2.6)
A 		17.9
(3)
A 		16
avr 5.8
(-0) 		9.2
(2.8) 		2.9
(-2.4) 		7.4
(1.3) 		2.2
(-3) 		9.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187041_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2740
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.23 NCBI
Target Description Y38E10A.23 /REP_DB=WormBase Gene ID /WP=CE21604 /TR=Q9NAI8 /GB=CAB54415.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064305 NCBI Caenorhabditis elegans Y38E10A.23 (Y38E10A.23) mRNA, complete cds. 11/11 None
SNAP00000017450 ENSEMBL cdna:SNAP chromosome:CEL140:II:12673234:12677695:-1 10/11 None
GENEFINDER00000017465 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12677204:12677695:-1 10/11 None
Y38E10A.23 ENSEMBL cdna:known chromosome:CEL140:II:12677085:12677695:-1 gene:Y38E10A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12677081-12677692(-) 79.65 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.23
Entrez Gene 189668 Entrez gene
SwissProt Q9NAI8 EMBL-EBI
WormBase CE21604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54414 Hypothetical protein Y38E10A.22 [Caenorhabditis elegans] ref|NP_496705.2| Y38E10A.22 [Caenorhabditis elegans] 1.0E-129
blast CAB54415 Hypothetical protein Y38E10A.23 [Caenorhabditis elegans] ref|NP_496706.1| Y38E10A.23 [Caenorhabditis elegans] 2.0E-82
blast CAB54415 Hypothetical protein Y38E10A.23 [Caenorhabditis elegans] ref|NP_496706.1| Y38E10A.23 [Caenorhabditis elegans] 4.0E-64
blast CAB54415 Hypothetical protein Y38E10A.23 [Caenorhabditis elegans] ref|NP_496706.1| Y38E10A.23 [Caenorhabditis elegans] 4.0E-63
blast CAE65392 Hypothetical protein CBG10339 [Caenorhabditis briggsae] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:187041_AT
agaagcctcggaagataccgctccagtgtactctcgtgagaatctcgaatttctccaaaa
agcgatgactcactcattcggtggagatatggagcagggaccgtccgtcattcaaaaatt
cttccatttcggcgatgagaacccggagaaggtcgttatgaacccggcgttgttggctgc
ggcgaaggaattggccgatcagcttgatgattaccttataatgggcaacttctcggagca
tttcattgctgagggcggcctcaaggctctcgcaatctcactattttatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCTCGGAAGATACCGCTCCA 69 75 99 Antisense
GCTCCAGTGTACTCTCGTGAGAATC 367 297 118 Antisense
AAAGCGATGACTCACTCATTCGGTG 287 125 157 Antisense
TATGGAGCAGGGACCGTCCGTCATT 552 653 186 Antisense
AAAAATTCTTCCATTTCGGCGATGA 686 127 212 Antisense
GAGAAGGTCGTTATGAACCCGGCGT 543 389 244 Antisense
GCGTTGTTGGCTGCGGCGAAGGAAT 136 245 265 Antisense
GCGAAGGAATTGGCCGATCAGCTTG 439 287 280 Antisense
TATAATGGGCAACTTCTCGGAGCAT 171 657 315 Antisense
ATTGCTGAGGGCGGCCTCAAGGCTC 602 5 343 Antisense
CTCTCGCAATCTCACTATTTTATAT 562 231 365 Antisense
Sequence Source Affymetrix Proprietary Database