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[187039_at]

Description F41H10.10 /REP_DB=WormBase Gene ID /WP=CE10290 /TR=Q20305 /GB=AAK29805.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 151.7
(-3)
M 		221.6
(-1.6)
A 		230.5
(-1.4)
M 		445.5
(3)
P 		294
B 195.9
(-2.1)
P 		167.5
(-3)
A 		230.1
(-0.9)
P 		348.1
(3)
P 		181
C 233.1
(-1.4)
P 		159.5
(-3)
A 		206.1
(-2)
P 		431.9
(3)
P 		272
avr 193.6
(-2.7) 		182.9
(-3) 		222.2
(-2) 		408.5
(3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1298
1 2 3 4 5 6 range
A 172.1
(-3)
A 		171.7
(-3)
A 		270.2
(-2.5)
P 		454.7
(-1.6)
P 		857.3
(0.4)
P 		1370.8
(3)
P 		1199
B 117.7
(-3)
A 		206.9
(-2.5)
P 		229.3
(-2.4)
P 		422.7
(-1.4)
P 		975.2
(1.5)
P 		1265.4
(3)
P 		1148
C 72.8
(-3)
A 		238.2
(-2.2)
A 		290.7
(-2)
P 		562
(-0.7)
P 		990
(1.3)
P 		1351.5
(3)
P 		1279
avr 120.9
(-3) 		205.6
(-2.6) 		263.4
(-2.3) 		479.8
(-1.2) 		940.8
(1.1) 		1329.2
(3) 		1208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 55.2
(-0.5)
M 		48.1
(-3)
A 		60.3
(1.3)
M 		65.2
(3)
P 		17
B 62.5
(0.9)
P 		41.4
(-3)
A 		53.3
(-0.8)
P 		74.2
(3)
P 		33
C 77.2
(3)
P 		45.9
(-3)
A 		71.8
(2)
P 		72.8
(2.2)
P 		31
avr 65
(1.7) 		45.1
(-3) 		61.8
(0.9) 		70.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 31.7
(-3)
A 		61.1
(-2.4)
A 		58.8
(-2.5)
P 		115.3
(-1.3)
P 		258.7
(1.5)
P 		333.7
(3)
P 		302
B 41
(-3)
A 		68.9
(-2.6)
P 		55.7
(-2.8)
P 		111.9
(-2)
P 		396.2
(1.9)
P 		471.8
(3)
P 		431
C 27
(-3)
A 		72.7
(-2.4)
A 		74
(-2.3)
P 		113
(-1.8)
P 		320.3
(1.1)
P 		452.4
(3)
P 		425
avr 33.2
(-3) 		67.6
(-2.5) 		62.8
(-2.5) 		113.4
(-1.8) 		325.1
(1.5) 		419.3
(3) 		386
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10938
Sequence Type Exemplar sequence
Representative Public ID F41H10.10 NCBI
Target Description F41H10.10 /REP_DB=WormBase Gene ID /WP=CE10290 /TR=Q20305 /GB=AAK29805.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068398 NCBI Caenorhabditis elegans Him-Three Paralog family member (htp-1) (htp-1) mRNA, complete cds. 11/11 None
SNAP00000003913 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5390348:5391546:-1 11/11 None
GENEFINDER00000003917 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5389019:5391546:-1 11/11 None
F41H10.10 ENSEMBL cdna:known chromosome:CEL140:IV:5390348:5391546:-1 gene:F41H10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068580 2/11 Cross Hyb Matching Probes B 
SNAP00000032058 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032097 2/11 Cross Hyb Matching Probes None
Y73B6BL.2 2/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5390353-5391552(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol htp-1
Ensembl F41H10.10
Entrez Gene 259571 Entrez gene
SwissProt Q20305 EMBL-EBI
WormBase CE31692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29805 Him-three paralog protein 1 [Caenorhabditis elegans] ref|NP_500799.2| Him-Three Paralog family member (htp-1) [Caenorhabditis elegans] 0.0
blast B88691 protein F41H10.10 [imported] - Caenorhabditis elegans 0.0
blast AAN63423 Him-three paralog protein 2 [Caenorhabditis elegans] ref|NP_500981.3| Him-Three Paralog family member (htp-2) [Caenorhabditis elegans] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR003511 EMBL-EBI DNA-binding HORMA 1.0E-76
Sequence
Target Sequence 
>C. ELEGANS:187039_AT
ggaagatcctcacttcgcaaagcttgctcaacttgtatacgagggtggcgacagcgtacg
agatcaaatggtgacgattgttcgcagtgttcagttcctctgcacaaaagttctcgaacc
gttgccagaagaattcacggctaattttcgattggagtacacaaacgatgctccatccaa
tttccgcattgatggcttcgaagattcttccactttttacacacttcctgatgatatcca
atcggcaaccattggtcacttgcgcccaggatgccacgctgcaaacatggaatgctggag
catgttgatgtccgattcatacgaagcagagttgactctcaagcgacacctggacaaagt
ttccgataggcatggattcaatccagtgaatgtgctgtataaatcgtttaattcggagga
cagtgacacaagtcttagtcaggccactactgaatctgtcaacgatcaaggaggaaacga
gacttctccggtggatgatataactgagtctctcgagaaagcacaaatgtcgcctatcca
gacgagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATCCTCACTTCGCAAAGCTT 698 531 450 Antisense
GACGATTGTTCGCAGTGTTCAGTTC 248 379 522 Antisense
CAGTTCCTCTGCACAAAAGTTCTCG 353 205 541 Antisense
AAAGTTCTCGAACCGTTGCCAGAAG 50 123 556 Antisense
GCTCCATCCAATTTCCGCATTGATG 198 299 619 Antisense
CCACTTTTTACACACTTCCTGATGA 195 273 659 Antisense
ATCGGCAACCATTGGTCACTTGCGC 39 35 690 Antisense
CCAGGATGCCACGCTGCAAACATGG 227 271 715 Antisense
AGAGTTGACTCTCAAGCGACACCTG 298 69 777 Antisense
AGGCCACTACTGAATCTGTCAACGA 321 51 890 Antisense
CAAATGTCGCCTATCCAGACGAGAC 333 193 973 Antisense
Sequence Source Affymetrix Proprietary Database