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[187038_at]

Description Y38E10A.21 /REP_DB=WormBase Gene ID /WP=CE21602 /TR=Q9NAJ0 /GB=CAB54413.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 29      6grp_cgc > 29      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 70.4
(-0.1)
A 		62.2
(-1.1)
A 		45.5
(-3)
A 		97.4
(3)
A 		52
B 55.2
(0.9)
A 		75.6
(3)
A 		16.4
(-3)
A 		16.9
(-2.9)
A 		59
C 79.6
(0.3)
A 		53.2
(-1.8)
A 		37.5
(-3)
A 		113.2
(3)
P 		76
avr 68.4
(2) 		63.7
(1.3) 		33.1
(-3) 		75.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 40
(0.8)
A 		35.6
(0.3)
A 		9.2
(-2.7)
A 		6.8
(-3)
A 		31
(-0.2)
A 		58.6
(3)
A 		52
B 29.4
(3)
A 		26.6
(2.3)
A 		20.5
(0.8)
A 		5.1
(-3)
A 		15.1
(-0.5)
A 		24.8
(1.9)
A 		24
C 8
(-2.5)
A 		4.4
(-3)
A 		27.2
(-0.1)
A 		24.1
(-0.5)
A 		51.1
(3)
A 		16.8
(-1.4)
A 		47
avr 25.8
(0.9) 		22.2
(-0.1) 		19
(-1) 		12
(-3) 		32.4
(2.7) 		33.4
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.6
(3)
A 		13.5
(-2.3)
A 		11.9
(-3)
A 		14.3
(-1.9)
A 		14
B 17.6
(2.6)
A 		18.7
(3)
A 		3.8
(-2.9)
A 		3.6
(-3)
A 		15
C 26.4
(3)
A 		15.3
(-2)
A 		13.1
(-3)
A 		19.1
(-0.3)
P 		13
avr 23.2
(3) 		15.8
(-0.3) 		9.6
(-3) 		12.3
(-1.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.4
(-0.3)
A 		12.7
(2.2)
A 		2
(-2.9)
A 		1.7
(-3)
A 		9.4
(0.7)
A 		14.3
(3)
A 		13
B 10.2
(3)
A 		8.9
(2.1)
A 		5
(-0.5)
A 		1.4
(-3)
A 		6.1
(0.2)
A 		9.2
(2.3)
A 		9
C 3
(-2.3)
A 		1.3
(-3)
A 		6.9
(-0.8)
A 		4.8
(-1.6)
A 		16.5
(3)
A 		5.6
(-1.3)
A 		15
avr 6.9
(0.2) 		7.6
(0.7) 		4.6
(-1.5) 		2.6
(-3) 		10.7
(3) 		9.7
(2.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3905
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.21 NCBI
Target Description Y38E10A.21 /REP_DB=WormBase Gene ID /WP=CE21602 /TR=Q9NAJ0 /GB=CAB54413.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064303(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064303 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-4) (rgs-4) mRNA, complete cds. 11/11 None
GENEFINDER00000017454 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12668738:12671522:1 11/11 None
Y38E10A.21 ENSEMBL cdna:known chromosome:CEL140:II:12668738:12671522:1 gene:Y38E10A.21 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017449 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12668734-12671519(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rgs-4
Ensembl Y38E10A.21
Entrez Gene 189666 Entrez gene
SwissProt Q9NAJ0 EMBL-EBI
WormBase CE21602 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54413 Hypothetical protein Y38E10A.21 [Caenorhabditis elegans] ref|NP_496704.1| Regulator of G protein Signaling family member (rgs-4) [Caenorhabditis elegans] 1.0E-122
blast CAE65391 Hypothetical protein CBG10338 [Caenorhabditis briggsae] 2.0E-69
blast AAH76267 Zgc:92793 [Danio rerio] ref|NP_001002541.1| hypothetical protein LOC436814 [Danio rerio] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 1.1E-21
Sequence
Target Sequence 
>C. ELEGANS:187038_AT
atgcgagaacgccgtcgcagatccaacgaaaatcagtcaaatggaaacgggtcgactcca
ccaacgtcagctaacaatatgaatatgatctccccgaatcaggttccaccgtcgccaaga
cttagcccaaatgaatggcaattcgcatttgaccatgtgatctacgacgttgatggccgc
gctcaattcactaaatttttgcagtccgaatactcagaggagaatattttgttctggtgg
gcagttgaggaactaaaagcagttggagtatccgaaggtcgcactaaattcgaatcaact
gttcaggagatgtatgacacatttatcgctgcagaatcaccattggctatcaatattgat
catgacacgagaactgatattatcgcattagtcgagggaaaagagccatcaacgttcccg
gagaacatttacgagcgggcacaagcacatgtctaccggctcatggaaaaagactgtttc
tcccgcttcgtgcacacaaacgcctacaaggacgtggcaaagaagctgtcacttccacag
acatttcggttcaactgtatccgactgcaaccgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGAGAACGCCGTCGCAGATCCA 596 41 109 Antisense
AATATGATCTCCCCGAATCAGGTTC 302 173 190 Antisense
CGTCGCCAAGACTTAGCCCAAATGA 208 243 218 Antisense
GGCAATTCGCATTTGACCATGTGAT 126 535 245 Antisense
TGATCTACGACGTTGATGGCCGCGC 679 565 266 Antisense
TTATCGCTGCAGAATCACCATTGGC 50 681 431 Antisense
AGCCATCAACGTTCCCGGAGAACAT 143 83 512 Antisense
GCGGGCACAAGCACATGTCTACCGG 205 293 543 Antisense
CTTCGTGCACACAAACGCCTACAAG 217 221 594 Antisense
CACTTCCACAGACATTTCGGTTCAA 630 195 638 Antisense
CAACTGTATCCGACTGCAACCGGGC 61 189 660 Antisense
Sequence Source Affymetrix Proprietary Database