[Home] | [Total List]

[187037_at] cytidylyltransferase

Description F28A10.10 /REP_DB=WormBase Gene ID /WP=CE19415 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=cytidylyltransferase
Cluster 6grp_total > 43      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 30.3
(3)
A 		20.4
(-0.1)
A 		11.2
(-3)
A 		17.5
(-1)
A 		19
B 10.1
(-2.3)
A 		7
(-2.7)
A 		50.4
(3)
A 		4.9
(-3)
A 		46
C 12.2
(3)
A 		8.3
(-3)
A 		9.6
(-1)
A 		8.4
(-2.8)
A 		4
avr 17.5
(0.2) 		11.9
(-2.3) 		23.7
(3) 		10.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.4
(3)
A 		5.2
(-2.1)
A 		6.8
(1.6)
A 		4.8
(-3)
A 		6.5
(0.9)
A 		4.8
(-3)
A 		3
B 11.8
(-1.4)
A 		5.4
(-3)
A 		29.5
(3)
A 		9.2
(-2.1)
A 		9.8
(-1.9)
A 		6.9
(-2.6)
A 		24
C 8.5
(1.5)
A 		10.6
(3)
A 		7.8
(1)
A 		10.3
(2.8)
A 		2.3
(-3)
A 		9.3
(2.1)
A 		8
avr 9.2
(-0.9) 		7.1
(-2.4) 		14.7
(3) 		8.1
(-1.7) 		6.2
(-3) 		7
(-2.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11
(3)
A 		4.4
(-1.7)
A 		2.9
(-2.8)
A 		2.6
(-3)
A 		8
B 3.2
(-1.8)
A 		1.7
(-2.6)
A 		11.7
(3)
A 		1
(-3)
A 		11
C 4.1
(3)
A 		2.4
(-0.8)
A 		3.3
(1.2)
A 		1.4
(-3)
A 		3
avr 6.1
(3) 		2.8
(-1.5) 		6
(2.9) 		1.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.4
(-1.5)
A 		1.8
(1.5)
A 		1.5
(-0.8)
A 		1.2
(-3)
A 		2
(3)
A 		1.2
(-3)
A 		1
B 4.1
(-0.4)
A 		1.8
(-3)
A 		7.2
(3)
A 		2.4
(-2.3)
A 		4
(-0.6)
A 		2.6
(-2.1)
A 		5
C 3.1
(2.8)
A 		3.2
(3)
A 		2
(0.1)
A 		2.1
(0.4)
A 		0.7
(-3)
A 		3.1
(2.8)
A 		3
avr 2.9
(0.5) 		2.3
(-1.6) 		3.6
(3) 		1.9
(-3) 		2.2
(-1.9) 		2.3
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4369
Sequence Type Exemplar sequence
Representative Public ID F28A10.10 NCBI
Target Description F28A10.10 /REP_DB=WormBase Gene ID /WP=CE19415 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=cytidylyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061425 NCBI Caenorhabditis elegans F28A10.10 (cytidylyltransferase) mRNA, complete cds. 11/11 None
SNAP00000009507 ENSEMBL cdna:SNAP chromosome:CEL140:II:831286:831877:-1 10/11 None
GENEFINDER00000009528 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:831109:831877:-1 11/11 None
F28A10.10 ENSEMBL cdna:known chromosome:CEL140:II:831186:831877:-1 gene:F28A10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:831185-831877(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytidylyltransferase
Ensembl F28A10.10
Entrez Gene 185035 Entrez gene
SwissProt Q95YB8 EMBL-EBI
WormBase CE19415 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85467 Hypothetical protein F28A10.10 [Caenorhabditis elegans] ref|NP_493826.1| F28A10.10 [Caenorhabditis elegans] 1.0E-102
blast AAK85467 Hypothetical protein F28A10.10 [Caenorhabditis elegans] ref|NP_493826.1| F28A10.10 [Caenorhabditis elegans] 6.0E-95
blast AAK85467 Hypothetical protein F28A10.10 [Caenorhabditis elegans] ref|NP_493826.1| F28A10.10 [Caenorhabditis elegans] 2.0E-69
blast CAE70390 Hypothetical protein CBG16955 [Caenorhabditis briggsae] 1.0E-59
blast CAE61314 Hypothetical protein CBG05149 [Caenorhabditis briggsae] 2.0E-58
blast CAE70390 Hypothetical protein CBG16955 [Caenorhabditis briggsae] 1.0E-56
blast CAE61314 Hypothetical protein CBG05149 [Caenorhabditis briggsae] 1.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 1.3E-26
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 6.7E-28
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 1.3E-26
Sequence
Target Sequence 
>C. ELEGANS:187037_AT
cctgctccgttgactgatgattctactgttattgcaaaacgaaacttgattgattattcc
gagaaaatctccatggaaaatgccagaaatggattgtcaagtcgcccgatccgtgtctac
gctgatggaatctatgatatgttccactacggtcatgccaagcagctcttgcaaatcaag
caaatgtttccgatggtttatctgattgttggcgtgtgctccgacgaaaacactttgaaa
ttcaaaggtccgactgtgcaatcggaaaacgaaagatacgaatctgtgagacaatgtaga
tatgtggatgaggtgctcaaagatgctccttgggaagtcagcgtggactttttggaagag
atgaagatgtatgcggagcacaaagctgctggaagatttttggagactacgagaaccgag
ggagtgtccacaagtgattcgatttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGCTCCGTTGACTGATGATTCTA 173 267 28 Antisense
AAATGGATTGTCAAGTCGCCCGATC 322 121 114 Antisense
CCGATCCGTGTCTACGCTGATGGAA 114 265 133 Antisense
TGATATGTTCCACTACGGTCATGCC 241 563 162 Antisense
GGTTTATCTGATTGTTGGCGTGTGC 121 507 222 Antisense
TTGTTGGCGTGTGCTCCGACGAAAA 16 703 233 Antisense
ATTCAAAGGTCCGACTGTGCAATCG 571 11 267 Antisense
GAGGTGCTCAAAGATGCTCCTTGGG 297 403 337 Antisense
TGCTCCTTGGGAAGTCAGCGTGGAC 31 583 351 Antisense
TACGAGAACCGAGGGAGTGTCCACA 165 647 435 Antisense
GTGTCCACAAGTGATTCGATTTGCA 521 487 451 Antisense
Sequence Source Affymetrix Proprietary Database