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[187036_at]

Description F13E9.3 /REP_DB=WormBase Gene ID /WP=CE05605 /TR=SW:Q19408 /GB=CAA93406.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 61      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 86.7
(3)
P 		10.7
(-3)
A 		87
(3)
A 		11.5
(-2.9)
A 		76
B 124.6
(2.1)
P 		102.4
(1.2)
P 		143.7
(3)
P 		8.9
(-3)
A 		135
C 104.8
(2.8)
P 		107.2
(3)
A 		84.2
(1.5)
A 		16.9
(-3)
A 		90
avr 105.4
(3) 		73.4
(0.9) 		105
(3) 		12.4
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 121.7
(3)
P 		101.2
(1.1)
P 		111.3
(2)
P 		99
(0.9)
A 		78.1
(-1.1)
P 		57.4
(-3)
A 		64
B 84.8
(0.6)
P 		78.9
(0.2)
P 		116.9
(3)
P 		82.9
(0.5)
P 		36.7
(-3)
A 		50.6
(-2)
A 		80
C 84.3
(0.1)
A 		102.6
(1.1)
P 		132.7
(2.8)
A 		135.6
(3)
P 		51.8
(-1.7)
A 		29.2
(-3)
A 		106
avr 96.9
(1.1) 		94.2
(0.9) 		120.3
(3) 		105.8
(1.8) 		55.5
(-2.2) 		45.7
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 31.6
(3)
P 		2.3
(-2.9)
A 		22.7
(1.2)
A 		1.7
(-3)
A 		30
B 39.7
(3)
P 		25.3
(0.7)
P 		33.3
(2)
P 		1.9
(-3)
A 		38
C 34.7
(3)
P 		30.8
(2.3)
A 		29.4
(2)
A 		2.9
(-3)
A 		32
avr 35.3
(3) 		19.5
(0.1) 		28.5
(1.8) 		2.2
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22.4
(-0.7)
P 		36
(3)
P 		24.2
(-0.2)
P 		25.1
(0)
A 		23.6
(-0.4)
P 		14
(-3)
A 		22
B 29.5
(3)
P 		26.3
(1.7)
P 		28.4
(2.5)
P 		22
(-0.1)
P 		14.9
(-3)
A 		18.9
(-1.4)
A 		15
C 31.3
(2.4)
A 		31.3
(2.4)
P 		33.8
(3)
A 		27.3
(1.4)
P 		16.7
(-1.3)
A 		9.8
(-3)
A 		24
avr 27.7
(1.8) 		31.2
(3) 		28.8
(2.2) 		24.8
(0.7) 		18.4
(-1.5) 		14.2
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9010
Sequence Type Exemplar sequence
Representative Public ID F13E9.3 NCBI
Target Description F13E9.3 /REP_DB=WormBase Gene ID /WP=CE05605 /TR=SW:Q19408 /GB=CAA93406.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069618 NCBI Caenorhabditis elegans F13E9.3 (F13E9.3) mRNA, complete cds. 11/11 None
SNAP00000017042 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10881527:10882423:1 11/11 None
GENEFINDER00000017061 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10880535:10882423:1 11/11 None
F13E9.3 ENSEMBL cdna:known chromosome:CEL140:IV:10880535:10882423:1 gene:F13E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10880540-10882429(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E9.3
Entrez Gene 184421 Entrez gene
SwissProt Q19408 EMBL-EBI
WormBase CE05605 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628587_AT dm
DROSGENOME1:148324_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA93406 Hypothetical protein F13E9.3 [Caenorhabditis elegans] ref|NP_502019.1| F13E9.3 [Caenorhabditis elegans] sp|Q19408|YSMK_CAEEL Hypothetical protein F13E9.3 in chromosome IV, mitochondrial precursor 1.0E-143
blast CAE60717 Hypothetical protein CBG04389 [Caenorhabditis briggsae] 1.0E-135
blast CAA93406 Hypothetical protein F13E9.3 [Caenorhabditis elegans] ref|NP_502019.1| F13E9.3 [Caenorhabditis elegans] sp|Q19408|YSMK_CAEEL Hypothetical protein F13E9.3 in chromosome IV, mitochondrial precursor 1.0E-131
blast CAE60717 Hypothetical protein CBG04389 [Caenorhabditis briggsae] 1.0E-119
blast NP_001016400 hypothetical protein LOC549154 [Xenopus tropicalis] 2.0E-62
blast NP_001016400 hypothetical protein LOC549154 [Xenopus tropicalis] 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR005137 EMBL-EBI BtpA family 1.0E-126
Pfam IPR005137 EMBL-EBI BtpA family 1.0E-126
Pfam IPR005137 EMBL-EBI BtpA family 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187036_AT
ctccggcgtctcctgaaatagtcagttcaatggcattggcttcagatcaattggttaaat
caagagatgctcatcatccggctgctttgactggaattcaaattctagcagcagcaaatc
gggaagctctcgcagttgcctatacaactggcatggattttataagagctgaaggatttg
tgtattctcatgttgctgatgaaggatggattgatggttgtgcaggagggcttcttagat
atagatcttctttgaaagctgaaaatattgcaatttttacggatattaagaagaaacata
gtgcacattcagtcacttcagatgtatcaattcatgaaatggctaaagatgcaaaattca
attgtgccgatggagttattgttactggtagtgcaactggaagtgctgcaagtttagaag
aaatgattcaagtgatgaaagttcaagaatttccagttttgattggaagtggaatcaatg
gaaaaaatgctcgagaattcgtaaaagcacacggtttcatcgttggatcggacttcaaaa
tcgggggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGGCGTCTCCTGAAATAGTCAG 603 231 290 Antisense
TTCAATGGCATTGGCTTCAGATCAA 606 685 315 Antisense
CAAGAGATGCTCATCATCCGGCTGC 650 183 350 Antisense
CATCCGGCTGCTTTGACTGGAATTC 234 211 364 Antisense
GCAGCAAATCGGGAAGCTCTCGCAG 380 313 400 Antisense
AGCTCTCGCAGTTGCCTATACAACT 599 79 414 Antisense
GGTTGTGCAGGAGGGCTTCTTAGAT 598 505 505 Antisense
GTGCACATTCAGTCACTTCAGATGT 428 481 590 Antisense
AAAATTCAATTGTGCCGATGGAGTT 423 133 642 Antisense
GCACACGGTTTCATCGTTGGATCGG 175 317 796 Antisense
GGATCGGACTTCAAAATCGGGGGAG 30 483 814 Antisense
Sequence Source Affymetrix Proprietary Database