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[187035_at]

Description Y76B12C.6 /REP_DB=WormBase Gene ID /WP=CE25608 /TR=Q9N4C4 /GB=AAF36066.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 27.1
(3)
A 		8.5
(-2.1)
A 		5.2
(-3)
A 		6.5
(-2.6)
A 		22
B 9.3
(-2.1)
A 		8.5
(-3)
A 		13.5
(2.6)
A 		13.9
(3)
A 		5
C 31.9
(3)
A 		10.7
(-1.5)
A 		3.7
(-3)
A 		7.5
(-2.2)
A 		28
avr 22.8
(3) 		9.2
(-2.3) 		7.5
(-3) 		9.3
(-2.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.3
(2.5)
A 		5.8
(-1.4)
A 		4.5
(-2.8)
A 		9.8
(3)
A 		5.7
(-1.5)
A 		4.3
(-3)
A 		6
B 7.4
(-0.7)
A 		5.8
(-1.6)
A 		7.8
(-0.5)
A 		13.7
(3)
A 		3.5
(-3)
A 		4.5
(-2.4)
A 		10
C 11.5
(2.9)
A 		5.1
(-1.6)
A 		4
(-2.4)
A 		11.6
(3)
A 		6.4
(-0.7)
A 		3.1
(-3)
A 		9
avr 9.4
(1.2) 		5.6
(-1.8) 		5.4
(-1.9) 		11.7
(3) 		5.2
(-2.1) 		4
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.9
(3)
A 		1.8
(-2.5)
A 		1.4
(-2.7)
A 		1
(-3)
A 		9
B 3
(2.4)
A 		2.1
(-3)
A 		3.1
(3)
A 		3
(2.4)
A 		1
C 10.6
(3)
A 		3.1
(-1.8)
A 		1.3
(-3)
A 		1.3
(-3)
A 		9
avr 7.8
(3) 		2.3
(-2.5) 		1.9
(-2.9) 		1.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.7
(-0.2)
A 		2.1
(1.4)
A 		1
(-3)
A 		2.5
(3)
A 		1.7
(-0.2)
A 		1.1
(-2.6)
A 		2
B 2.6
(0.3)
A 		1.9
(-1.6)
A 		1.9
(-1.6)
A 		3.6
(3)
A 		1.4
(-3)
A 		1.7
(-2.2)
A 		2
C 4.3
(3)
A 		1.6
(-1.9)
A 		1
(-3)
A 		2.3
(-0.6)
A 		2.1
(-1)
A 		1
(-3)
A 		3
avr 2.9
(3) 		1.9
(-0.8) 		1.3
(-3) 		2.8
(2.6) 		1.7
(-1.5) 		1.3
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10773
Sequence Type Exemplar sequence
Representative Public ID Y76B12C.6 NCBI
Target Description Y76B12C.6 /REP_DB=WormBase Gene ID /WP=CE25608 /TR=Q9N4C4 /GB=AAF36066.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028410(11), NM_001028409(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028410 NCBI Caenorhabditis elegans Y76B12C.6b (Y76B12C.6) mRNA, complete cds. 11/11 None
NM_001028409 NCBI Caenorhabditis elegans Y76B12C.6a (Y76B12C.6) mRNA, complete cds. 11/11 None
SNAP00000007752 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1979987:2034887:1 10/11 None
GENEFINDER00000007766 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1986298:1992225:1 10/11 None
Y76B12C.6b ENSEMBL cdna:known chromosome:CEL140:IV:1986275:1991719:1 gene:Y76B12C.6 11/11 None
Y76B12C.6a ENSEMBL cdna:known chromosome:CEL140:IV:1986298:1991744:1 gene:Y76B12C.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1986303-1991750(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y76B12C.6
Entrez Gene 177000 Entrez gene
WormBase CE34618 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAP82631 Hypothetical protein Y76B12C.6 [Caenorhabditis elegans] ref|NP_001023581.1| Y76B12C.6b [Caenorhabditis elegans] 0.0
blast NP_001023580 Y76B12C.6a [Caenorhabditis elegans] 0.0
blast AAF36063 Hypothetical protein Y76B12C.2 [Caenorhabditis elegans] ref|NP_500156.2| Y76B12C.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004583 EMBL-EBI DNA repair protein Rad4 2.3E-74
Sequence
Target Sequence 
>C. ELEGANS:187035_AT
ctcctcctcagcttcagggaattgatttggcgacgattttgcagtcttttggggctccgg
gagcagctcctcagatgatccctgaactggaccccgggccgcctcggctgggccctccaa
ccctcccactggtgcctccaatcaatccagttgaaactgagagttcacttggagtatggg
caaaacgtggtggagcccgtgatggtcttggaagccttggactcctctcggagttggatc
gggctcgagatgtgctcgacgcggtgcccccgctaccgcctggtgggattcatggagctc
agcagcagcagcaggctgttagaaaacgaccggattcacaccagcaacaacaatcggagg
agaatcggaggaagagaatgtccactggagcgaggagtctgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTCCTCAGCTTCAGGGAATTGA 23 235 1157 Antisense
CGATTTTGCAGTCTTTTGGGGCTCC 438 247 1190 Antisense
CAGCTCCTCAGATGATCCCTGAACT 162 203 1220 Antisense
CTGGTGCCTCCAATCAATCCAGTTG 159 241 1285 Antisense
AAACGTGGTGGAGCCCGTGATGGTC 17 127 1339 Antisense
GATGGTCTTGGAAGCCTTGGACTCC 214 407 1357 Antisense
CTTGGACTCCTCTCGGAGTTGGATC 692 217 1372 Antisense
GTTGGATCGGGCTCGAGATGTGCTC 140 437 1389 Antisense
TGGTGGGATTCATGGAGCTCAGCAG 583 553 1437 Antisense
AGAAAACGACCGGATTCACACCAGC 308 73 1477 Antisense
GTCCACTGGAGCGAGGAGTCTGACT 579 475 1536 Antisense
Sequence Source Affymetrix Proprietary Database