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[187034_at]

Description Y57A10A.22 /REP_DB=WormBase Gene ID /WP=CE25505 /TR=Q9U212 /GB=CAB60766.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.4
(1.3)
A 		0.9
(-3)
A 		1.7
(-0.7)
A 		3
(3)
A 		2
B 5.5
(-1.9)
A 		10.9
(3)
A 		4.3
(-3)
A 		4.6
(-2.7)
A 		7
C 4.8
(-1.7)
A 		13.2
(3)
A 		11.6
(2.1)
A 		2.5
(-3)
A 		11
avr 4.2
(-2) 		8.3
(3) 		5.9
(0.1) 		3.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14
(0.1)
A 		13.7
(0)
A 		6.5
(-1.7)
A 		26
(3)
A 		1
(-3)
A 		1.2
(-3)
A 		25
B 19.9
(3)
A 		4.2
(-1.9)
A 		16
(1.8)
A 		17.2
(2.2)
A 		8.3
(-0.6)
A 		0.5
(-3)
A 		19
C 3.7
(-2.3)
A 		26.9
(2.6)
A 		1.1
(-2.9)
A 		19.3
(1)
A 		28.7
(3)
A 		0.6
(-3)
A 		28
avr 12.5
(0.5) 		14.9
(1.2) 		7.9
(-0.9) 		20.8
(3) 		12.7
(0.6) 		0.8
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.9
(3)
A 		0.2
(-3)
A 		0.4
(-1.3)
A 		0.4
(-1.3)
A 		1
B 1.8
(-0.2)
A 		2.7
(3)
A 		1
(-3)
A 		1
(-3)
A 		2
C 1.6
(-1)
A 		3.8
(2.7)
A 		4
(3)
A 		0.4
(-3)
A 		4
avr 1.4
(-0) 		2.2
(3) 		1.8
(1.5) 		0.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.6
(-0.8)
A 		4.9
(1.4)
A 		1.4
(-2)
A 		6.6
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		6
B 6.9
(3)
A 		1.4
(-1.9)
A 		3.9
(0.3)
A 		4.5
(0.9)
A 		3.4
(-0.1)
A 		0.2
(-3)
A 		7
C 1.4
(-2.2)
A 		8.2
(2.3)
A 		0.3
(-2.9)
A 		3.9
(-0.6)
A 		9.3
(3)
A 		0.2
(-3)
A 		9
avr 3.6
(1.3) 		4.8
(2.8) 		1.9
(-0.9) 		5
(3) 		4.3
(2.1) 		0.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3883
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.22 NCBI
Target Description Y57A10A.22 /REP_DB=WormBase Gene ID /WP=CE25505 /TR=Q9U212 /GB=CAB60766.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064197 NCBI Caenorhabditis elegans Y57A10A.22 (Y57A10A.22) mRNA, complete cds. 11/11 None
Y57A10A.22 ENSEMBL cdna:known chromosome:CEL140:II:12235980:12237711:-1 gene:Y57A10A.22 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026026 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12235976-12237708(-) 79.28 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.22
Entrez Gene 190341 Entrez gene
SwissProt Q9U212 EMBL-EBI
WormBase CE25505 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60766 Hypothetical protein Y57A10A.22 [Caenorhabditis elegans] ref|NP_496598.1| Y57A10A.22 [Caenorhabditis elegans] 2.0E-19
blast T31642 hypothetical protein Y57A10A.t - Caenorhabditis elegans 7.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496598.1 1 5-24
Y57A10A.22 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:187034_AT
acagaacaggttctgtctgccgtctctccggttatcccatactatttcgctttttttctt
agagattccgagaagaagaagaagaaggaagcagaatgtgaattgtacacgtcggctaac
ggtgtacggctcgaaaatttacaagtttcagagcattttccgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGAACAGGTTCTGTCTGCCGTCT 39 109 25 Antisense
TTATCCCATACTATTTCGCTTTTTT 228 681 56 Antisense
TCCCATACTATTTCGCTTTTTTTCT 187 599 59 Antisense
TATTTCGCTTTTTTTCTTAGAGATT 556 661 67 Antisense
GCTTTTTTTCTTAGAGATTCCGAGA 226 305 73 Antisense
GAATGTGAATTGTACACGTCGGCTA 195 333 118 Antisense
GAATTGTACACGTCGGCTAACGGTG 523 319 124 Antisense
ACACGTCGGCTAACGGTGTACGGCT 573 79 131 Antisense
GTCGGCTAACGGTGTACGGCTCGAA 94 3 135 Antisense
GCTAACGGTGTACGGCTCGAAAATT 498 299 139 Antisense
ACAAGTTTCAGAGCATTTTCCGACA 681 105 165 Antisense
Sequence Source Affymetrix Proprietary Database