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[187033_at]

Description F54D1.6 /REP_DB=WormBase Gene ID /WP=CE20868 /TR=SW:Q20762 /GB=CAB00863.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 30      6grp_total > 18      4grp_total > 23      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 847
1 2 3 4 range
A 1294.8
(3)
P 		553.2
(-3)
P 		616.3
(-2.5)
P 		1123.4
(1.6)
P 		742
B 1400.4
(3)
P 		572.1
(-3)
P 		592.3
(-2.9)
P 		966.7
(-0.1)
P 		828
C 1059.2
(3)
P 		668.7
(-2.4)
P 		624.4
(-3)
P 		959.6
(1.6)
P 		435
avr 1251.5
(3) 		598
(-3) 		611
(-2.9) 		1016.6
(0.8) 		654

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 740
1 2 3 4 5 6 range
A 926.8
(1.7)
P 		872.2
(0.9)
P 		612.3
(-3)
P 		1012.7
(3)
P 		710.6
(-1.5)
P 		766.5
(-0.7)
P 		400
B 1139.2
(3)
P 		767.8
(-1.2)
P 		610.9
(-3)
P 		743
(-1.5)
P 		697.8
(-2)
P 		740.3
(-1.5)
P 		528
C 1350.8
(3)
P 		852.1
(-1.5)
P 		858.7
(-1.4)
P 		742.1
(-2.5)
P 		1010.9
(-0.1)
P 		682.3
(-3)
P 		669
avr 1138.9
(3) 		830.7
(-1.2) 		694
(-3) 		832.6
(-1.1) 		806.4
(-1.5) 		729.7
(-2.5) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 471.4
(3)
P 		120.1
(-3)
P 		161.1
(-2.3)
P 		164.4
(-2.2)
P 		351
B 446.6
(3)
P 		141.3
(-2.9)
P 		137.3
(-3)
P 		206
(-1.7)
P 		309
C 350.6
(3)
P 		192.2
(-2)
P 		217.6
(-1.2)
P 		161.8
(-3)
P 		189
avr 422.9
(3) 		151.2
(-3) 		172
(-2.5) 		177.4
(-2.4) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 170.8
(-1.7)
P 		310.2
(3)
P 		133.4
(-3)
P 		256.8
(1.2)
P 		214.4
(-0.3)
P 		186.6
(-1.2)
P 		177
B 396.4
(3)
P 		255.6
(-0.4)
P 		148.4
(-3)
P 		196.8
(-1.8)
P 		283.5
(0.3)
P 		276
(0.1)
P 		248
C 500.7
(3)
P 		260
(-1.1)
P 		218.5
(-1.8)
P 		149.2
(-3)
P 		327.1
(0)
P 		228.4
(-1.6)
P 		352
avr 356
(3) 		275.3
(0.4) 		166.8
(-3) 		200.9
(-1.9) 		275
(0.4) 		230.3
(-1) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9483
Sequence Type Exemplar sequence
Representative Public ID F54D1.6 NCBI
Target Description F54D1.6 /REP_DB=WormBase Gene ID /WP=CE20868 /TR=SW:Q20762 /GB=CAB00863.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069718 NCBI Caenorhabditis elegans F54D1.6 (F54D1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000005965 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11286190:11293672:1 10/11 None
F54D1.6 ENSEMBL cdna:known chromosome:CEL140:IV:11287782:11294884:1 gene:F54D1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11286195-11294296(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D1.6
Entrez Gene 178037 Entrez gene
SwissProt Q20762 EMBL-EBI
WormBase CE37523 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7160 cell-matrix adhesion inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00863 Hypothetical protein F54D1.6 [Caenorhabditis elegans] ref|NP_502119.2| F54D1.6 [Caenorhabditis elegans] sp|Q20762|YAO6_CAEEL Hypothetical protein F54D1.6 precursor 0.0
blast CAE62038 Hypothetical protein CBG06054 [Caenorhabditis briggsae] 0.0
blast CAE60721 Hypothetical protein CBG04396 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010362 EMBL-EBI Nid 3.9E-36
Pfam IPR005533 EMBL-EBI AMOP domain 5.0E-110
Pfam IPR010362 EMBL-EBI Nid 3.9E-36
Pfam IPR005533 EMBL-EBI AMOP domain 5.0E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502119.2 1 1319-1341
F54D1.6 1 1319-1341
GENEFINDER00000005965 1 1397-1419
Sequence
Target Sequence 
>C. ELEGANS:187033_AT
gaacacgtttacttctgatcgattcgatgcttcacgacagtacaatagctgtggtgtgat
caatatcgaatatccagaatatttgatgaaaacttcatcaatgtcatctgcttacttaca
aggagatgttgcccgattcgagtgtttccaatcacattggatctatggagttcatgaata
taaatgcggaattgttgtggatcgaaatcaacgaaacatcattgatccacgcgattatcg
ttttgaatggaacaaaggagaacagccatggtgtagatcaagagaaaaacagaatttctt
gacttggcttgcgattattggtggaatatttggagtattagtatttgtgattctcatttt
cttgtgctgttggattgtgaaacagaagaaaaagggagaagcagcagaaagaagaggata
cgatatggcaagcagaagctcaatgactggaagtcgtggcggaaagaagtatccaattca
cgaatcagagccattaaatgagaaacgttttgatgcagatacgtacagagatgatgattt
ttatcctcctgcaagagaagaacaatacgctgctcgaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACGTTTACTTCTGATCGATTC 367 351 3744 Antisense
GATCGATTCGATGCTTCACGACAGT 57 419 3760 Antisense
ACTTCATCAATGTCATCTGCTTACT 447 103 3835 Antisense
AGGAGATGTTGCCCGATTCGAGTGT 682 53 3864 Antisense
GCCCGATTCGAGTGTTTCCAATCAC 626 281 3874 Antisense
ACATCATTGATCCACGCGATTATCG 164 107 3959 Antisense
ACAGAATTTCTTGACTTGGCTTGCG 154 109 4032 Antisense
ACTTGGCTTGCGATTATTGGTGGAA 293 103 4045 Antisense
TTCTCATTTTCTTGTGCTGTTGGAT 481 691 4094 Antisense
GATGATGATTTTTATCCTCCTGCAA 263 411 4273 Antisense
GAAGAACAATACGCTGCTCGAAATG 215 339 4300 Antisense
Sequence Source Affymetrix Proprietary Database