[Home] | [Total List]

[187032_at]

Description Y57A10A.19 /REP_DB=WormBase Gene ID /WP=CE25503 /TR=Q9U213 /GB=CAB60765.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.3
(-3)
A 		53.3
(3)
A 		14.4
(-2.1)
A 		14.1
(-2.1)
A 		46
B 9.1
(-2.4)
A 		50.1
(3)
A 		4.6
(-3)
A 		35.4
(1.1)
A 		46
C 5.4
(-3)
A 		10.9
(-2)
A 		21.3
(-0.2)
A 		39.8
(3)
A 		34
avr 7.3
(-3) 		38.1
(3) 		13.4
(-1.8) 		29.8
(1.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 57.2
(3)
A 		55.8
(2.8)
A 		4.7
(-3)
A 		9
(-2.5)
A 		5.9
(-2.9)
A 		32.5
(0.2)
A 		53
B 65.3
(3)
P 		6.4
(-3)
A 		46.6
(1.1)
A 		8.6
(-2.8)
A 		9
(-2.7)
A 		15.4
(-2.1)
A 		59
C 51
(3)
A 		28.9
(-2.8)
A 		41.3
(0.5)
A 		46.8
(1.9)
A 		28
(-3)
A 		39.4
(-0)
P 		23
avr 57.8
(3) 		30.4
(-0.8) 		30.9
(-0.7) 		21.5
(-2) 		14.3
(-3) 		29.1
(-1) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.7
(-2.6)
A 		11.6
(3)
A 		3.8
(-1.9)
A 		2.1
(-3)
A 		10
B 2.9
(-2)
A 		12.4
(3)
A 		1.1
(-3)
A 		7.6
(0.5)
A 		11
C 1.8
(-3)
A 		3.1
(-1.6)
A 		7.4
(3)
A 		6.7
(2.3)
A 		6
avr 2.5
(-3) 		9
(3) 		4.1
(-1.5) 		5.5
(-0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.6
(0.1)
A 		19.8
(3)
A 		1
(-3)
A 		2.3
(-2.6)
A 		1.8
(-2.7)
A 		7.9
(-0.8)
A 		19
B 22.7
(3)
P 		2.1
(-3)
A 		11.3
(-0.3)
A 		2.3
(-2.9)
A 		3.7
(-2.5)
A 		5.7
(-2)
A 		21
C 18.9
(3)
A 		8.8
(-3)
A 		10.5
(-2)
A 		9.4
(-2.6)
A 		9.1
(-2.8)
A 		13.2
(-0.4)
P 		10
avr 17.4
(3) 		10.2
(-0.4) 		7.6
(-1.6) 		4.7
(-3) 		4.9
(-2.9) 		8.9
(-1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3474
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.19 NCBI
Target Description Y57A10A.19 /REP_DB=WormBase Gene ID /WP=CE25503 /TR=Q9U213 /GB=CAB60765.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064194 NCBI Caenorhabditis elegans Y57A10A.19 (Y57A10A.19) mRNA, complete cds. 11/11 None
SNAP00000026025 ENSEMBL cdna:SNAP chromosome:CEL140:II:12225261:12227126:1 11/11 None
GENEFINDER00000026061 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12225261:12233986:1 10/11 None
Y57A10A.19 ENSEMBL cdna:known chromosome:CEL140:II:12225261:12227126:1 gene:Y57A10A.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12225257-12227123(+) 96.79 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.19
Entrez Gene 174862 Entrez gene
SwissProt Q9U213 EMBL-EBI
WormBase CE25503 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21637.1.S1_S_AT similar to splicing coactivator subunit SRm300 cfa
DROSOPHILA_2:1632271_A_AT dm
DROSOPHILA_2:1638022_AT dm
DROSGENOME1:141708_AT dm
HG-U133_PLUS_2:208610_S_AT serine/arginine repetitive matrix 2 hs
HG-U133A_2:208610_S_AT serine/arginine repetitive matrix 2 hs
HG-FOCUS:208610_S_AT serine/arginine repetitive matrix 2 hs
HG-U133A:208610_S_AT serine/arginine repetitive matrix 2 hs
HG-U133_PLUS_2:207435_S_AT serine/arginine repetitive matrix 2 hs
HG-U133A:207435_S_AT serine/arginine repetitive matrix 2 hs
HG-U133A_2:207435_S_AT serine/arginine repetitive matrix 2 hs
HU35KSUBA:AB002322_AT serine/arginine repetitive matrix 2 hs
HU35KSUBD:RC_AA347209_S_AT serine/arginine repetitive matrix 2 hs
U133_X3P:G7706718_3P_A_AT serine/arginine repetitive matrix 2 hs
U133_X3P:HS2.197114.3.S1_3P_S_AT serine/arginine repetitive matrix 2 hs
U133_X3P:HS.197114.2.S1_3P_A_AT serine/arginine repetitive matrix 2 hs
U133_X3P:HS.197114.1.S1_3P_S_AT serine/arginine repetitive matrix 2 hs
HG-U133_PLUS_2:1554671_A_AT serine/arginine repetitive matrix 2 hs
HG-U95AV2:32761_AT serine/arginine repetitive matrix 2 hs
HG-U95C:65441_AT serine/arginine repetitive matrix 2 hs
HG-U95E:78525_AT serine/arginine repetitive matrix 2 hs
HG-U95E:78527_G_AT serine/arginine repetitive matrix 2 hs
HU35KSUBA:AA381902_AT Serine/arginine repetitive matrix 2 hs
HUGENEFL:X97301_AT Serine/arginine repetitive matrix 2 hs
U133_X3P:HS.197114.2.S1_3P_AT Serine/arginine repetitive matrix 2 hs
U133_X3P:216629_3P_AT Serine/arginine repetitive matrix 2 hs
HG-U133A_2:216629_AT Serine/arginine repetitive matrix 2 hs
HG-U133_PLUS_2:216629_AT Serine/arginine repetitive matrix 2 hs
HG-U133A:216629_AT Serine/arginine repetitive matrix 2 hs
MOUSE430_2:1438688_AT serine/arginine repetitive matrix 2 mm
MOE430B:1438688_AT serine/arginine repetitive matrix 2 mm
MG-U74BV2:109690_AT serine/arginine repetitive matrix 2 mm
MG-U74CV2:140357_AT serine/arginine repetitive matrix 2 mm
MG-U74BV2:165227_R_AT serine/arginine repetitive matrix 2 mm
MG-U74BV2:162708_AT serine/arginine repetitive matrix 2 mm
MOE430A:1427902_AT serine/arginine repetitive matrix 2 mm
MOUSE430A_2:1427902_AT serine/arginine repetitive matrix 2 mm
MOUSE430_2:1427902_AT serine/arginine repetitive matrix 2 mm
MOE430B:1437638_AT serine/arginine repetitive matrix 2 mm
MOUSE430_2:1437638_AT serine/arginine repetitive matrix 2 mm
MG-U74AV2:101203_R_AT serine/arginine repetitive matrix 2 mm
MG-U74BV2:109532_AT serine/arginine repetitive matrix 2 mm
MU19KSUBC:TC37256_AT serine/arginine repetitive matrix 2 mm
MU11KSUBA:T25639_RC_AT serine/arginine repetitive matrix 2 mm
MG-U74CV2:137372_AT Serine/arginine repetitive matrix 2, mRNA (cDNA clone IMAGE:5354975) mm
MU19KSUBA:TC21831_F_AT Serine/arginine repetitive matrix 2, mRNA (cDNA clone IMAGE:5354975) mm
RG-U34B:RC_AA964630_AT serine/arginine repetitive matrix 2 (predicted) rn
RG-U34C:RC_AI237807_AT serine/arginine repetitive matrix 2 (predicted) rn
RAE230A:1390048_AT serine/arginine repetitive matrix 2 (predicted) rn
RAT230_2:1390048_AT serine/arginine repetitive matrix 2 (predicted) rn
RAE230A:1398940_AT serine/arginine repetitive matrix 2 (predicted) rn
RAT230_2:1398940_AT serine/arginine repetitive matrix 2 (predicted) rn
RAE230A:1377500_AT Serine/arginine repetitive matrix 2 (predicted) rn
RAT230_2:1377500_AT Serine/arginine repetitive matrix 2 (predicted) rn
RG-U34B:RC_AA956019_AT Serine/arginine repetitive matrix 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB55023 Hypothetical protein Y57A10A.20 [Caenorhabditis elegans] ref|NP_496596.2| Y57A10A.20 [Caenorhabditis elegans] 0.0
blast CAE73472 Hypothetical protein CBG20923 [Caenorhabditis briggsae] 1.0E-128
blast CAB60765 Hypothetical protein Y57A10A.19 [Caenorhabditis elegans] ref|NP_496595.1| Y57A10A.19 [Caenorhabditis elegans] 3.0E-96
blast T31639 hypothetical protein Y57A10A.q - Caenorhabditis elegans 3.0E-96
blast CAB60765 Hypothetical protein Y57A10A.19 [Caenorhabditis elegans] ref|NP_496595.1| Y57A10A.19 [Caenorhabditis elegans] 1.0E-95
blast CAE73471 Hypothetical protein CBG20922 [Caenorhabditis briggsae] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 2.2E-64
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 1.0E-126
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 9.4E-7
Sequence
Target Sequence 
>C. ELEGANS:187032_AT
gaaacgtcgggagaagcttcggcagaaggaacgggagcttttggcggtgtcggataaggt
gaagaaagaagaaccagcagagtccagtgatgaggaagacagccggaaagatcagaggaa
gcctcgggaagatcgcagaagatcggtggagcgacaggatcaacgggaagatcgtagaga
tcgcagaagatcccccgaggatcctcgagagcgtcggagatcccctgaagatcgtacagt
tcgcagaagatcgccggaacgtcgccgccagcagcgatccccaagtgtcgagcgtcggaa
gtcaccacaacgccgggatgagcgacgtcggcgacacgattcgtcggaaaatgagagaag
atccactgccaccgcgtcgaaaaaatcgagaatggacgaactcgaagtgaaacaagagcc
accaagtgattctgaagattatatcgcaaaaaccaatttggcaccgattcgtgttgaaaa
atccgccgaaaaagtggaaaaatctcgaaaatcatcgtcagaaagctcttcgggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGTCGGGAGAAGCTTCGGCAG 437 351 690 Antisense
GAGCTTTTGGCGGTGTCGGATAAGG 172 385 724 Antisense
GAGGAAGCCTCGGGAAGATCGCAGA 284 405 804 Antisense
TAGAGATCGCAGAAGATCCCCCGAG 297 653 864 Antisense
ATCCCCCGAGGATCCTCGAGAGCGT 653 37 879 Antisense
ATCCCCTGAAGATCGTACAGTTCGC 124 39 909 Antisense
GTACAGTTCGCAGAAGATCGCCGGA 629 457 923 Antisense
AGTGTCGAGCGTCGGAAGTCACCAC 509 59 973 Antisense
GTCACCACAACGCCGGGATGAGCGA 497 465 990 Antisense
ACTGCCACCGCGTCGAAAAAATCGA 650 95 1054 Antisense
CATCGTCAGAAAGCTCTTCGGGCTC 202 211 1202 Antisense
Sequence Source Affymetrix Proprietary Database