[Home] | [Total List]

[187031_at]

Description F28H7.8 /REP_DB=WormBase Gene ID /WP=CE05757 /TR=SW:Q19895 /GB=CAA96639.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 81      6grp_total > 94      4grp_total > 61      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 301.6
(3)
P 		224.4
(0.1)
P 		217.9
(-0.1)
P 		139.3
(-3)
P 		162
B 202.6
(1.6)
P 		228.3
(2.7)
P 		234.4
(3)
P 		93.2
(-3)
P 		141
C 281.3
(3)
P 		261.9
(2)
P 		277.4
(2.8)
P 		169.6
(-3)
P 		112
avr 261.8
(3) 		238.2
(1.9) 		243.2
(2.1) 		134
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 188.8
(-3)
P 		287.6
(2.2)
P 		189.7
(-3)
P 		268.9
(1.2)
P 		302.5
(3)
P 		269.2
(1.2)
P 		114
B 241.1
(-1)
P 		159.5
(-2.5)
P 		135.7
(-3)
P 		245.9
(-0.9)
P 		451
(3)
P 		280.1
(-0.3)
P 		315
C 300.3
(0.8)
P 		212
(-0.7)
P 		80.6
(-3)
P 		240.2
(-0.2)
P 		426.7
(3)
P 		298.9
(0.8)
P 		346
avr 243.4
(-0.5) 		219.7
(-1) 		135.3
(-3) 		251.7
(-0.3) 		393.4
(3) 		282.7
(0.4) 		258
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 109.8
(3)
P 		48.7
(-1.1)
P 		57
(-0.5)
P 		20.4
(-3)
P 		89
B 64.6
(3)
P 		56.4
(1.9)
P 		54.3
(1.6)
P 		19.9
(-3)
P 		45
C 93.1
(2.7)
P 		75.3
(1.1)
P 		96.7
(3)
P 		28.6
(-3)
P 		68
avr 89.2
(3) 		60.1
(0.4) 		69.3
(1.2) 		23
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 34.8
(-3)
P 		102.3
(3)
P 		41.3
(-2.4)
P 		68.2
(-0)
P 		91.3
(2)
P 		65.5
(-0.3)
P 		68
B 83.9
(-1)
P 		53.1
(-2.2)
P 		32.9
(-3)
P 		65.1
(-1.7)
P 		183.2
(3)
P 		104.5
(-0.1)
P 		150
C 111.3
(1.6)
P 		64.7
(-0.7)
P 		20.5
(-3)
P 		48.3
(-1.6)
P 		138.1
(3)
P 		100.1
(1.1)
P 		118
avr 76.7
(-0.4) 		73.4
(-0.6) 		31.6
(-3) 		60.5
(-1.4) 		137.5
(3) 		90
(0.3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13530
Sequence Type Exemplar sequence
Representative Public ID F28H7.8 NCBI
Target Description F28H7.8 /REP_DB=WormBase Gene ID /WP=CE05757 /TR=SW:Q19895 /GB=CAA96639.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073345
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038704 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10762216:10763154:1 None
F28H7.8 ENSEMBL cdna:known chromosome:CEL140:V:10761545:10763154:1 gene:F28H7.8 None
SNAP00000038695 ENSEMBL cdna:SNAP chromosome:CEL140:V:10761545:10763154:1 None
NM_073345 NCBI Caenorhabditis elegans F28H7.8 (F28H7.8) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10761544-10763381(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28H7.8
Entrez Gene 185099 Entrez gene
SwissProt Q19895 EMBL-EBI
WormBase CE37900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96639 Hypothetical protein F28H7.8 [Caenorhabditis elegans] ref|NP_505746.2| F28H7.8 [Caenorhabditis elegans] sp|Q19895|YUQP_CAEEL Hypothetical protein F28H7.8 in chromosome V 0.0
blast CAE64883 Hypothetical protein CBG09695 [Caenorhabditis briggsae] 0.0
blast CAA96639 Hypothetical protein F28H7.8 [Caenorhabditis elegans] ref|NP_505746.2| F28H7.8 [Caenorhabditis elegans] sp|Q19895|YUQP_CAEEL Hypothetical protein F28H7.8 in chromosome V 1.0E-148
blast CAE64883 Hypothetical protein CBG09695 [Caenorhabditis briggsae] 1.0E-133
blast CAE59210 Hypothetical protein CBG02523 [Caenorhabditis briggsae] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.4E-11
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.4E-11
Sequence
Target Sequence 
>C. ELEGANS:187031_AT
gtttcagtttcagcgtccaaacatcgcatgctcatctacaaagttgataaaccagacaca
gagctattaatgtattctcataatgaaaacgatatcacaattactctatactactcgaaa
aacaagaatgtatctgaaaatgatcttgaattggctgtagctccaattccaaaatgtggt
cttccggcaatggatctctttgattacaactgtgaatatcctggatattattatattaaa
ttggcaaatgaagcttcctggcttttgccatctacttatcgaataattgtgattgaaaag
gagtcaggaaaagaattggaaccattgaatctcaatgaaaaatggatcaagaaaggacaa
aaatcaaagaagaaaaatatttcatgttcactgttattccaagatgagcttcgatgtttc
ttttttgattttttcattgcttcttctgttaaatttctttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCAGTTTCAGCGTCCAAACATC 216 449 868 Antisense
TCCAAACATCGCATGCTCATCTACA 41 589 883 Antisense
ATCACAATTACTCTATACTACTCGA 86 27 961 Antisense
ATGATCTTGAATTGGCTGTAGCTCC 242 47 1007 Antisense
GGCTGTAGCTCCAATTCCAAAATGT 563 539 1020 Antisense
TGGTCTTCCGGCAATGGATCTCTTT 134 553 1044 Antisense
AATGAAGCTTCCTGGCTTTTGCCAT 533 165 1114 Antisense
GCTTTTGCCATCTACTTATCGAATA 581 303 1128 Antisense
ATTTCATGTTCACTGTTATTCCAAG 691 15 1246 Antisense
GATGAGCTTCGATGTTTCTTTTTTG 513 409 1270 Antisense
TTGCTTCTTCTGTTAAATTTCTTTG 598 703 1304 Antisense
Sequence Source Affymetrix Proprietary Database