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[187030_at]

Description Y39A3CL.1 /REP_DB=WormBase Gene ID /WP=CE26984 /TR=Q9N412 /GB=AAF60522.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 132.6
(-0.6)
A 		99.7
(-3)
A 		129
(-0.9)
A 		181.7
(3)
A 		82
B 145
(3)
A 		92.2
(-0.2)
A 		44.6
(-3)
A 		103.5
(0.5)
A 		100
C 121.2
(-1.1)
A 		131.5
(-0.5)
A 		89.6
(-3)
A 		190.5
(3)
A 		101
avr 132.9
(0.8) 		107.8
(-1.3) 		87.7
(-3) 		158.6
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 55.8
(-3)
A 		116.5
(-0.3)
A 		99.5
(-1)
A 		94.8
(-1.2)
A 		116.2
(-0.3)
A 		188.7
(3)
A 		133
B 58.6
(-3)
A 		111.7
(0)
A 		70.6
(-2.3)
A 		68.6
(-2.4)
A 		155.9
(2.5)
A 		164.7
(3)
A 		106
C 139.9
(-0.1)
M 		107.5
(-1)
A 		109.4
(-1)
A 		37.5
(-3)
A 		249
(3)
A 		175.3
(0.9)
A 		212
avr 84.8
(-2) 		111.9
(-0.5) 		93.2
(-1.6) 		67
(-3) 		173.7
(2.9) 		176.2
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 48.3
(3)
A 		21.7
(-3)
A 		33.7
(-0.3)
A 		26.6
(-1.9)
A 		27
B 46.2
(3)
A 		22.8
(-0.9)
A 		10.3
(-3)
A 		22.1
(-1)
A 		36
C 40.1
(3)
A 		37.8
(1.4)
A 		31.2
(-3)
A 		32.1
(-2.4)
A 		9
avr 44.9
(3) 		27.4
(-2.3) 		25.1
(-3) 		26.9
(-2.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 10.3
(-3)
A 		41.4
(2.2)
A 		21.7
(-1.1)
A 		24
(-0.7)
A 		35.1
(1.2)
A 		45.9
(3)
A 		36
B 20.4
(-2.6)
A 		37.2
(-0.4)
A 		17.1
(-3)
A 		18.2
(-2.9)
A 		63.3
(3)
A 		61.4
(2.8)
A 		46
C 51.9
(0.6)
M 		32.8
(-0.9)
A 		27.9
(-1.3)
A 		7.5
(-3)
A 		80.6
(3)
A 		58.7
(1.2)
A 		73
avr 27.5
(-1.5) 		37.1
(-0.1) 		22.2
(-2.2) 		16.6
(-3) 		59.7
(3) 		55.3
(2.4) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8341
Sequence Type Exemplar sequence
Representative Public ID Y39A3CL.1 NCBI
Target Description Y39A3CL.1 /REP_DB=WormBase Gene ID /WP=CE26984 /TR=Q9N412 /GB=AAF60522.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065062 NCBI Caenorhabditis elegans Y39A3CL.1 (Y39A3CL.1) mRNA, complete cds. 11/11 A 
Y39A3CL.1.1 ENSEMBL cdna:known chromosome:CEL140:III:1834500:1846740:1 gene:Y39A3CL.1 11/11 None
Y39A3CL.1.2 ENSEMBL cdna:known chromosome:CEL140:III:1834502:1846740:1 gene:Y39A3CL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1824914-1842948(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3CL.1
Entrez Gene 175329 Entrez gene
SwissProt Q9N412 EMBL-EBI
WormBase CE32963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK93862 Hypothetical protein Y39A3CL.1 [Caenorhabditis elegans] ref|NP_497463.2| Y39A3CL.1 [Caenorhabditis elegans] 0.0
blast CAE69109 Hypothetical protein CBG15135 [Caenorhabditis briggsae] 1.0E-136
Sequence
Target Sequence 
>C. ELEGANS:187030_AT
attcgtcttcacaacgattcgccaggattctattattcagaagctcttcaatgcttcatg
gatgatccgaataatgtattagagcactggttgctctcaaaatattcaaatagtactcta
caagtcggaatctctgctggagaaccatcagccatcggaactccgagatttgtgatcgct
gagattactgatgctaaagctcggaagcttcaggctctcaccgaagccggagatatcaaa
ttcgtcgcggagccggcgattgttatcaattttcgcggtgttttatatgttccgagactg
ccgaaaagcgtttttagactccgctcgtcagatatgccaatacctccaggaacacggatc
ttcatcacagcacactatgaaaatcgttggattatcgataaaatcgacgttgatcgccga
gatacgtctgttgaagcgctcgtttgtcacgatgcaaagagtggaaaggaaatgatctgg
ttccactgtacgtctgctcggggctccgaccaacttccatatctcctgaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGTCTTCACAACGATTCGCCAG 3 11 2302 Antisense
TCTACAAGTCGGAATCTCTGCTGGA 301 613 2418 Antisense
GGAGAACCATCAGCCATCGGAACTC 657 517 2440 Antisense
CAAATTCGTCGCGGAGCCGGCGATT 207 193 2538 Antisense
TTTAGACTCCGCTCGTCAGATATGC 327 671 2614 Antisense
TCAGATATGCCAATACCTCCAGGAA 577 623 2629 Antisense
CAGGAACACGGATCTTCATCACAGC 485 209 2648 Antisense
TGATCGCCGAGATACGTCTGTTGAA 548 565 2712 Antisense
TCTGTTGAAGCGCTCGTTTGTCACG 244 607 2728 Antisense
AATGATCTGGTTCCACTGTACGTCT 148 165 2772 Antisense
ACCAACTTCCATATCTCCTGAAAAC 445 85 2810 Antisense
Sequence Source Affymetrix Proprietary Database