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[187029_at]

Description C17H12.10 /REP_DB=WormBase Gene ID /WP=CE16870 /TR=O45081 /GB=AAC02588.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 423
1 2 3 4 range
A 378.1
(1.1)
P 		208.1
(-2.8)
P 		200.3
(-3)
P 		458
(3)
P 		258
B 420
(0.7)
P 		253.1
(-1.9)
P 		180.7
(-3)
P 		566.4
(3)
P 		386
C 403.2
(-0.3)
P 		246.2
(-3)
P 		244.1
(-3)
P 		604
(3)
P 		360
avr 400.4
(0.4) 		235.8
(-2.5) 		208.4
(-3) 		542.8
(3) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 516
(2.5)
P 		490.9
(2.1)
P 		539.8
(3)
P 		530.6
(2.8)
P 		294.2
(-1.7)
P 		228.1
(-3)
P 		312
B 473.7
(0.2)
P 		554.6
(1.1)
P 		713.7
(3)
P 		417.4
(-0.5)
P 		381.1
(-0.9)
P 		207.6
(-3)
P 		506
C 663.5
(3)
P 		604.2
(2.1)
P 		372.4
(-1.3)
P 		377.7
(-1.2)
P 		381.1
(-1.2)
P 		258.9
(-3)
P 		405
avr 551.1
(3) 		549.9
(3) 		542
(2.8) 		441.9
(0.9) 		352.1
(-0.7) 		231.5
(-3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 137.7
(3)
P 		45.2
(-3)
P 		52.4
(-2.5)
P 		67
(-1.6)
P 		93
B 133.9
(3)
P 		62.5
(-1.7)
P 		41.9
(-3)
P 		120.7
(2.1)
P 		92
C 133.5
(3)
P 		70.8
(-3)
P 		85.1
(-1.6)
P 		101.8
(-0)
P 		63
avr 135
(3) 		59.5
(-3) 		59.8
(-3) 		96.5
(-0.1) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 95.1
(-1)
P 		174.6
(3)
P 		117.6
(0.1)
P 		134.6
(1)
P 		88.8
(-1.3)
P 		55.5
(-3)
P 		119
B 164.8
(1.9)
P 		184.6
(3)
P 		173.3
(2.4)
P 		110.6
(-1.1)
P 		154.8
(1.3)
P 		77.4
(-3)
P 		107
C 245.9
(3)
P 		184.4
(0.8)
P 		94.8
(-2.3)
P 		76
(-3)
P 		123.3
(-1.3)
P 		86.7
(-2.6)
P 		170
avr 168.6
(2.3) 		181.2
(3) 		128.6
(0.1) 		107.1
(-1.1) 		122.3
(-0.3) 		73.2
(-3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8377
Sequence Type Exemplar sequence
Representative Public ID C17H12.10 NCBI
Target Description C17H12.10 /REP_DB=WormBase Gene ID /WP=CE16870 /TR=O45081 /GB=AAC02588.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068644 NCBI Caenorhabditis elegans C17H12.10 (C17H12.10) mRNA, complete cds. 11/11 None
GENEFINDER00000015128 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6806858:6809584:1 11/11 None
C17H12.10 ENSEMBL cdna:known chromosome:CEL140:IV:6806853:6809614:1 gene:C17H12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6806863-6809590(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.10
Entrez Gene 177446 Entrez gene
SwissProt O45081 EMBL-EBI
WormBase CE16870 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02588 Hypothetical protein C17H12.10 [Caenorhabditis elegans] ref|NP_501045.1| C17H12.10 [Caenorhabditis elegans] 1.0E-109
blast CAE61472 Hypothetical protein CBG05365 [Caenorhabditis briggsae] 8.0E-86
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501045.1 1 91-113
C17H12.10 1 91-113
GENEFINDER00000015128 1 91-113
Sequence
Target Sequence 
>C. ELEGANS:187029_AT
ggaccctcaggaacacagagtgctcctgtgggaggagcaacaccaaaatcttttcttggg
aattggcaggaggaaacggaccattctcaaggcagtgcagatttcgcaaaactcattcac
aaaagttatctctctgataaagaaaagattctggtggatgctcttacggagtataaacgt
gtcgggtataaaagaactcttttcaaaatatttctcatgatctgcgtttgcatattttta
ctggttttcacagtggtctcaattggatgttggtctgaacacttggaacttatcgagcat
ttaggagtatatgatgaacgatatgttaggacacgaaagagaaatcaaagtgaattgatt
cttgattgcccaatgatggggttcataggaagcttatattcgccacaaagttcaactgtc
gatttgtttggcaaaattatttcgattatttcgattaggaaattgattcagctcataatc
cgtcttattcgaagtattcgtctgaaaacaacaacagaggcagaagctcgaaagcatgtc
gatgaaactcaaaaagatctgaacggtctcgccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCCTCAGGAACACAGAGTGCTC 673 523 85 Antisense
AAACGGACCATTCTCAAGGCAGTGC 675 93 158 Antisense
GCAGATTTCGCAAAACTCATTCACA 566 311 181 Antisense
ATTCTGGTGGATGCTCTTACGGAGT 467 9 232 Antisense
ATATTTCTCATGATCTGCGTTTGCA 484 19 292 Antisense
GTTTTCACAGTGGTCTCAATTGGAT 377 449 328 Antisense
GGTCTGAACACTTGGAACTTATCGA 699 499 356 Antisense
GAAGCTTATATTCGCCACAAAGTTC 566 341 473 Antisense
GTTCAACTGTCGATTTGTTTGGCAA 508 445 494 Antisense
TCAGCTCATAATCCGTCTTATTCGA 78 625 552 Antisense
AAAAGATCTGAACGGTCTCGCCGAG 20 131 636 Antisense
Sequence Source Affymetrix Proprietary Database