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[187028_s_at] --- /// dehydrogenase

Description C33E10.10 /REP_DB=WormBase Gene ID /WP=CE17495 /TR=O61799 /GB=AAC16981.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 65.6
(1.2)
A 		42.1
(-3)
A 		75.7
(3)
P 		47.1
(-2.1)
A 		34
B 36.9
(-1.3)
A 		64.2
(0.5)
A 		104.2
(3)
M 		9.6
(-3)
A 		95
C 33.4
(-1.6)
A 		74.7
(0.8)
A 		113
(3)
P 		9.1
(-3)
A 		104
avr 45.3
(-1.1) 		60.3
(0) 		97.6
(3) 		21.9
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 14.2
(-1.7)
A 		29.4
(0.2)
A 		51.7
(3)
A 		13
(-1.8)
A 		3.6
(-3)
A 		30.2
(0.3)
A 		48
B 18.6
(-0.8)
A 		5.7
(-2.4)
A 		48.3
(3)
A 		31.1
(0.8)
A 		43.8
(2.4)
A 		1.4
(-3)
A 		47
C 33.8
(-2.5)
A 		41.8
(-0.9)
A 		32
(-2.9)
A 		60.7
(3)
A 		32.8
(-2.7)
A 		31.4
(-3)
A 		29
avr 22.2
(-2.7) 		25.6
(-1.8) 		44
(3) 		34.9
(0.6) 		26.7
(-1.5) 		21
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 23.9
(3)
A 		9.1
(-2.2)
A 		19.8
(1.6)
P 		6.9
(-3)
A 		17
B 11.8
(-0.3)
A 		15.8
(0.7)
A 		24.1
(3)
M 		2
(-3)
A 		22
C 11.1
(-1.5)
A 		21.5
(0.2)
A 		39.4
(3)
P 		1.5
(-3)
A 		38
avr 15.6
(-0) 		15.5
(-0) 		27.8
(3) 		3.5
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.6
(-2.1)
A 		10.5
(2.5)
A 		11.3
(3)
A 		3.3
(-1.7)
A 		1.1
(-3)
A 		7.4
(0.7)
A 		10
B 6.5
(-0.9)
A 		1.9
(-2.5)
A 		11.7
(0.9)
A 		8.2
(-0.3)
A 		17.8
(3)
A 		0.5
(-3)
A 		17
C 12.5
(2.6)
A 		12.8
(3)
A 		8.2
(-3)
A 		12.2
(2.2)
A 		10.6
(0.1)
A 		10.5
(0)
A 		5
avr 7.2
(-1.5) 		8.4
(0.2) 		10.4
(3) 		7.9
(-0.5) 		9.8
(2.2) 		6.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187028_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17364
Sequence Type Exemplar sequence
Representative Public ID C33E10.10 NCBI
Target Description C33E10.10 /REP_DB=WormBase Gene ID /WP=CE17495 /TR=O61799 /GB=AAC16981.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078394(11), NM_078405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078394 NCBI Caenorhabditis elegans T25G12.2 (dehydrogenase) mRNA, complete cds. 11/11 A 
NM_078405 NCBI Caenorhabditis elegans C33E10.10 (C33E10.10) mRNA, complete cds. 11/11 None
SNAP00000027877 ENSEMBL cdna:SNAP chromosome:CEL140:X:17243274:17244673:1 11/11 None
GENEFINDER00000027890 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17243274:17244673:1 11/11 None
SNAP00000003541 ENSEMBL cdna:SNAP chromosome:CEL140:X:17301285:17301834:-1 11/11 None
T25G12.2 ENSEMBL cdna:known chromosome:CEL140:X:17243178:17248716:1 gene:T25G12.2 11/11 A 
C33E10.10 ENSEMBL cdna:known chromosome:CEL140:X:17301285:17301834:-1 gene:C33E10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17301284-17301834(-) 100.0 100.0
Public Domain and Genome References
Gene Title
dehydrogenase
Ensembl T25G12.2
C33E10.10
Entrez Gene 183165 Entrez gene
188907 Entrez gene
SwissProt O61799 EMBL-EBI
Q22787 EMBL-EBI
WormBase CE17495 Wormbase
CE07539 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69018 Hypothetical protein T25G12.2 [Caenorhabditis elegans] ref|NP_510795.1| T25G12.2 [Caenorhabditis elegans] 0.0
blast AAC69018 Hypothetical protein T25G12.2 [Caenorhabditis elegans] ref|NP_510795.1| T25G12.2 [Caenorhabditis elegans] 1.0E-177
blast AAU05548 Dehydrogenases, short chain protein 30 [Caenorhabditis elegans] ref|NP_510793.2| T25G12.7 [Caenorhabditis elegans] 1.0E-152
blast AAU05548 Dehydrogenases, short chain protein 30 [Caenorhabditis elegans] ref|NP_510793.2| T25G12.7 [Caenorhabditis elegans] 1.0E-151
blast CAE69687 Hypothetical protein CBG15942 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.7E-38
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.7E-38
Sequence
Target Sequence 
>C. ELEGANS:187028_S_AT
ggaaagttgttggggtagaggatgaaaaccaaaagaaaggatattcaccggaacactctg
cacgcatgatttccgatgcaatccgtgatcgagtgtcggactttgacatggctccatttg
gtgctcgctttgcagttttcctcagatatttctggccaactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAGTTGTTGGGGTAGAGGATGA 324 527 191 Antisense
AAGGATATTCACCGGAACACTCTGC 127 161 227 Antisense
CGCATGATTTCCGATGCAATCCGTG 36 255 253 Antisense
GATTTCCGATGCAATCCGTGATCGA 710 427 258 Antisense
GATGCAATCCGTGATCGAGTGTCGG 121 411 265 Antisense
CCGTGATCGAGTGTCGGACTTTGAC 124 263 273 Antisense
GAGTGTCGGACTTTGACATGGCTCC 444 401 281 Antisense
GTCGGACTTTGACATGGCTCCATTT 172 471 285 Antisense
GACTTTGACATGGCTCCATTTGGTG 181 373 289 Antisense
TTTTCCTCAGATATTTCTGGCCAAC 540 677 326 Antisense
TCCTCAGATATTTCTGGCCAACTCT 532 591 329 Antisense
Sequence Source Affymetrix Proprietary Database