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[187027_at]

Description F26D11.10 /REP_DB=WormBase Gene ID /WP=CE17712 /TR=O61966 /GB=AAC17749.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 39      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 354
(3)
A 		171
(-1)
A 		80.3
(-3)
A 		235.3
(0.4)
A 		274
B 333.5
(3)
M 		155.8
(-2)
A 		120.4
(-3)
A 		209
(-0.5)
A 		213
C 420.5
(3)
P 		132.9
(-2.5)
A 		104.3
(-3)
A 		210.9
(-1)
A 		316
avr 369.3
(3) 		153.2
(-1.8) 		101.7
(-3) 		218.4
(-0.4) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 294.9
(3)
A 		200.4
(0.1)
A 		159.6
(-1.2)
A 		112.8
(-2.7)
A 		106.2
(-2.9)
A 		102.5
(-3)
A 		192
B 223.8
(3)
A 		124.5
(-0.7)
A 		130.3
(-0.5)
A 		155.6
(0.4)
A 		99.4
(-1.7)
A 		64.9
(-3)
A 		159
C 237.3
(3)
A 		126.9
(-1.1)
A 		81
(-2.8)
A 		75.6
(-3)
A 		111.8
(-1.7)
A 		90.4
(-2.5)
A 		162
avr 252
(3) 		150.6
(-0.7) 		123.6
(-1.6) 		114.7
(-2) 		105.8
(-2.3) 		85.9
(-3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 128.9
(3)
A 		37.1
(-2.1)
A 		21
(-3)
A 		34.4
(-2.3)
A 		108
B 106.4
(3)
M 		38.5
(-2.2)
A 		27.9
(-3)
A 		44.5
(-1.7)
A 		79
C 139.2
(3)
P 		38.2
(-2.8)
A 		36.4
(-3)
A 		35.6
(-3)
A 		104
avr 124.8
(3) 		37.9
(-2.4) 		28.4
(-3) 		38.2
(-2.4) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 54.4
(0.8)
A 		71.3
(3)
A 		34.8
(-1.7)
A 		28.6
(-2.5)
A 		32.1
(-2.1)
A 		24.9
(-3)
A 		46
B 77.9
(3)
A 		41.4
(-1.1)
A 		31.6
(-2.2)
A 		41.2
(-1.1)
A 		40.4
(-1.2)
A 		24.2
(-3)
A 		54
C 88
(3)
A 		38.7
(-1.1)
A 		20.6
(-2.6)
A 		15.2
(-3)
A 		36.2
(-1.3)
A 		30.3
(-1.8)
A 		73
avr 73.4
(3) 		50.5
(0.1) 		29
(-2.7) 		28.3
(-2.8) 		36.2
(-1.8) 		26.5
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12264
Sequence Type Exemplar sequence
Representative Public ID F26D11.10 NCBI
Target Description F26D11.10 /REP_DB=WormBase Gene ID /WP=CE17712 /TR=O61966 /GB=AAC17749.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072649 NCBI Caenorhabditis elegans INneXin family member (inx-4) (inx-4) mRNA, complete cds. 11/11 None
SNAP00000012541 ENSEMBL cdna:SNAP chromosome:CEL140:V:7964130:7968154:-1 11/11 None
GENEFINDER00000012545 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7964130:7971490:-1 11/11 None
F26D11.10 ENSEMBL cdna:known chromosome:CEL140:V:7964130:7968420:-1 gene:F26D11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7964130-7968421(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol inx-4
Ensembl F26D11.10
Entrez Gene 184979 Entrez gene
SwissProt O61966 EMBL-EBI
WormBase CE17712 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17749 Innexin protein 4 [Caenorhabditis elegans] ref|NP_505050.1| INneXin family member (inx-4) [Caenorhabditis elegans] 0.0
blast CAE64022 Hypothetical protein CBG08617 [Caenorhabditis briggsae] 0.0
blast CAB05813 Hypothetical protein T23H4.1 [Caenorhabditis elegans] ref|NP_492614.1| INneXin family member (inx-20) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505050.1 5 30-52,62-80,139-161,232-254,323-345
F26D11.10 5 30-52,62-80,139-161,232-254,323-345
SNAP00000012541 5 35-57,67-85,144-166,237-259,328-350
GENEFINDER00000012545 5 27-49,64-82,141-163,234-256,325-347
Sequence
Target Sequence 
>C. ELEGANS:187027_AT
atagggatcgctttcgttttgtgctccgtcatcttgagctcacatcggaccctgataagc
cagagttatttaggaaagagaagcgaaaacaagttgaacattttctcaggacatatttaa
aggtcgacggcgttcttgtcctccgaatgattgctcttcatgctggcgtaatgttctgta
cagaaattacggatgcattatggaaacgatatttaagtcaacacccagaaaatctaattg
acgatgattcgtcattgatcacatttgctagagcacaatcaattcgacgaaaacgaaatg
atagttcaaattctgatggccagaatcatcaacgactcggacgaattttgtcgcatagaa
gtactggtggaagcttccgattaaataggacacaatcaactaatcgaagtttgaacacag
aaaacaaaactggcgctgcaaccggatcaaatgcagctgcatcaccaaatacaccaccac
cagttccaaattctcgatttggaaaagtgaaaccacgtcgaacagtcgtcacaatcaatt
cccaacaaaacgacgctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGGGATCGCTTTCGTTTTGTGCT 571 21 1058 Antisense
CTCCGTCATCTTGAGCTCACATCGG 260 235 1081 Antisense
TCACATCGGACCCTGATAAGCCAGA 308 627 1097 Antisense
TAAAGGTCGACGGCGTTCTTGTCCT 26 641 1175 Antisense
ATTGCTCTTCATGCTGGCGTAATGT 597 5 1207 Antisense
ATTCGTCATTGATCACATTTGCTAG 494 9 1304 Antisense
AACAAAACTGGCGCTGCAACCGGAT 498 133 1480 Antisense
TGCAGCTGCATCACCAAATACACCA 77 579 1509 Antisense
ACCACCAGTTCCAAATTCTCGATTT 19 87 1533 Antisense
GAAACCACGTCGAACAGTCGTCACA 273 359 1566 Antisense
CAATTCCCAACAAAACGACGCTCGA 411 179 1593 Antisense
Sequence Source Affymetrix Proprietary Database