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[187025_at]

Description Y57A10A.10 /REP_DB=WormBase Gene ID /WP=CE22630 /TR=Q9NA75 /GB=CAB55030.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 21      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 71      6grp_total > 31      4grp_total > 04      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 288.4
(-1.3)
P 		215.9
(-2.4)
P 		176.1
(-3)
P 		564.4
(3)
P 		388
B 279.2
(-1.9)
P 		237.4
(-2.8)
P 		228.9
(-3)
P 		510.1
(3)
P 		281
C 292.5
(-1.1)
P 		235.8
(-2.3)
P 		200.2
(-3)
P 		499.3
(3)
P 		299
avr 286.7
(-1.4) 		229.7
(-2.5) 		201.7
(-3) 		524.6
(3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 382.2
(0.5)
P 		398.9
(0.9)
P 		488.3
(3)
P 		379
(0.5)
P 		288.8
(-1.6)
P 		229.2
(-3)
P 		259
B 371.2
(1.6)
P 		393.4
(2)
P 		351.1
(1.2)
P 		441.6
(3)
P 		317.6
(0.5)
P 		145.3
(-3)
P 		296
C 399.8
(2)
P 		397.3
(1.9)
P 		443.7
(3)
P 		432.4
(2.7)
P 		248.9
(-1.6)
P 		187.6
(-3)
P 		256
avr 384.4
(1.9) 		396.5
(2.2) 		427.7
(3) 		417.7
(2.8) 		285.1
(-0.6) 		187.4
(-3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 105
(3)
P 		46.9
(-2.9)
P 		46
(-3)
P 		82.6
(0.7)
P 		59
B 89
(0.9)
P 		58.6
(-2.4)
P 		53
(-3)
P 		108.7
(3)
P 		56
C 96.8
(3)
P 		67.8
(-3)
P 		69.8
(-2.6)
P 		84.2
(0.4)
P 		29
avr 96.9
(3) 		57.8
(-2.8) 		56.3
(-3) 		91.8
(2.2) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 70.5
(-2)
P 		141.9
(3)
P 		106.3
(0.5)
P 		96.1
(-0.2)
P 		87.1
(-0.8)
P 		55.8
(-3)
P 		86
B 129.1
(2.9)
P 		130.9
(3)
P 		85.2
(-0.6)
P 		117
(1.9)
P 		129
(2.9)
P 		54.2
(-3)
P 		77
C 148.2
(3)
P 		121.2
(1.1)
P 		112.9
(0.5)
P 		87
(-1.3)
P 		80.5
(-1.8)
P 		62.8
(-3)
P 		85
avr 115.9
(1.7) 		131.3
(3) 		101.5
(0.6) 		100
(0.5) 		98.9
(0.4) 		57.6
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3432
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.10 NCBI
Target Description Y57A10A.10 /REP_DB=WormBase Gene ID /WP=CE22630 /TR=Q9NA75 /GB=CAB55030.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064202 NCBI Caenorhabditis elegans Y57A10A.10 (Y57A10A.10) mRNA, complete cds. 11/11 None
SNAP00000026031 ENSEMBL cdna:SNAP chromosome:CEL140:II:12257609:12259291:-1 11/11 None
GENEFINDER00000026067 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12257609:12259291:-1 11/11 None
Y57A10A.10 ENSEMBL cdna:known chromosome:CEL140:II:12256852:12259291:-1 gene:Y57A10A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12257605-12259288(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.10
Entrez Gene 174867 Entrez gene
SwissProt Q9NA75 EMBL-EBI
WormBase CE22630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55030 Hypothetical protein Y57A10A.10 [Caenorhabditis elegans] ref|NP_496603.1| Y57A10A.10 [Caenorhabditis elegans] 1.0E-133
blast CAE73481 Hypothetical protein CBG20933 [Caenorhabditis briggsae] 1.0E-128
blast CAB55030 Hypothetical protein Y57A10A.10 [Caenorhabditis elegans] ref|NP_496603.1| Y57A10A.10 [Caenorhabditis elegans] 1.0E-120
blast CAE73481 Hypothetical protein CBG20933 [Caenorhabditis briggsae] 1.0E-114
blast CAE73477 Hypothetical protein CBG20929 [Caenorhabditis briggsae] 3.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR007866 EMBL-EBI Protein of unknown function DUF714 1.0E-126
Pfam IPR007866 EMBL-EBI Protein of unknown function DUF714 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496603.1 4 21-43,58-76,182-204,208-230
Y57A10A.10 4 21-43,58-76,182-204,208-230
SNAP00000026031 4 21-43,58-76,182-204,208-230
GENEFINDER00000026067 4 21-43,58-76,229-251,261-280
Sequence
Target Sequence 
>C. ELEGANS:187025_AT
acgacacgacgacataatcctcgccacaatcatctggtatctggtgttctacgcgccatt
cgacggaatctataaaatcgcgaaaatcacgccggtcaagtgtgtgctcgccgtgatgaa
ggaggtgaagcgggcctataaggtgtcacacggtgtatcgcatgctgcgaagctctaccc
gaactcttatattgtgcaagtgctcgtcggaaccgccaaaggagccggctcaggaattgt
gagaacgctggagcaactcgtacgtggtgtctggctgccgactcataatgaactgctccg
cccgtcttttgcaacgaaggcgtgtgttgttgcggcttctgtgttggcattggagaagag
tggaacttatttgacggcgccacatgatttggtttatttggtaatcgtcggtttctttgt
ctacttcaagctctcggcagtcattctccacgtcaccgatccgtttgctccaatcgaaaa
cctattctgcgcgattttcatgggaggaatctgggatgcagtgtcacgagccctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACACGACGACATAATCCTCGCC 641 91 168 Antisense
TAATCCTCGCCACAATCATCTGGTA 667 635 182 Antisense
AATCACGCCGGTCAAGTGTGTGCTC 400 169 252 Antisense
TCACACGGTGTATCGCATGCTGCGA 133 629 313 Antisense
AGCTCTACCCGAACTCTTATATTGT 177 81 338 Antisense
GAGCAACTCGTACGTGGTGTCTGGC 227 391 418 Antisense
TCTGGCTGCCGACTCATAATGAACT 599 607 437 Antisense
GAACTTATTTGACGGCGCCACATGA 642 349 530 Antisense
TAATCGTCGGTTTCTTTGTCTACTT 341 633 569 Antisense
ACCTATTCTGCGCGATTTTCATGGG 63 87 647 Antisense
CTGGGATGCAGTGTCACGAGCCCTG 62 241 678 Antisense
Sequence Source Affymetrix Proprietary Database