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[187024_at]

Description Y39A3CL.2 /REP_DB=WormBase Gene ID /WP=CE25256 /TR=Q9N415 /GB=AAF60519.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 26      6grp_total > 06      4grp_total > 46      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 457.1
(3)
P 		341.1
(0.4)
P 		185.2
(-3)
A 		296
(-0.6)
P 		272
B 497.7
(3)
P 		277.5
(-2)
P 		234.6
(-3)
M 		293.3
(-1.7)
P 		263
C 443.9
(3)
P 		318.9
(0.1)
P 		214
(-2.3)
P 		185.4
(-3)
A 		259
avr 466.2
(3) 		312.5
(-0.6) 		211.3
(-3) 		258.2
(-1.9) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 388.9
(3)
P 		226.4
(-0.8)
P 		179.6
(-1.9)
P 		130.1
(-3)
A 		158
(-2.4)
A 		144.2
(-2.7)
A 		259
B 399.8
(3)
P 		249.1
(-0.1)
P 		193.6
(-1.2)
P 		137.7
(-2.3)
A 		196.9
(-1.1)
P 		104.3
(-3)
A 		296
C 438.2
(3)
P 		275.9
(0.5)
P 		207.7
(-0.5)
P 		126.8
(-1.8)
A 		199.2
(-0.7)
A 		46
(-3)
A 		392
avr 409
(3) 		250.5
(-0.1) 		193.6
(-1.2) 		131.5
(-2.4) 		184.7
(-1.3) 		98.2
(-3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 166.4
(3)
P 		74.1
(-1.5)
P 		48.4
(-2.8)
A 		43.3
(-3)
P 		123
B 158.7
(3)
P 		68.5
(-2.2)
P 		54.4
(-3)
M 		62.5
(-2.5)
P 		104
C 146.9
(3)
P 		91.7
(0.1)
P 		74.6
(-0.8)
P 		31.3
(-3)
A 		116
avr 157.3
(3) 		78.1
(-1.3) 		59.1
(-2.3) 		45.7
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 71.7
(1.9)
P 		80.5
(3)
P 		39.1
(-2.2)
P 		33
(-3)
A 		47.7
(-1.1)
A 		35.1
(-2.7)
A 		48
B 139.1
(3)
P 		82.9
(-0.3)
P 		47
(-2.4)
P 		36.5
(-3)
A 		80
(-0.5)
P 		38.9
(-2.9)
A 		103
C 162.4
(3)
P 		84.2
(-0.2)
P 		52.9
(-1.5)
P 		25.5
(-2.6)
A 		64.5
(-1)
A 		15.4
(-3)
A 		147
avr 124.4
(3) 		82.5
(0.3) 		46.3
(-2) 		31.7
(-2.9) 		64.1
(-0.8) 		29.8
(-3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8300
Sequence Type Exemplar sequence
Representative Public ID Y39A3CL.2 NCBI
Target Description Y39A3CL.2 /REP_DB=WormBase Gene ID /WP=CE25256 /TR=Q9N415 /GB=AAF60519.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065058 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-168) (tag-168) mRNA, complete cds. 11/11 None
GENEFINDER00000009088 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1789073:1806610:1 11/11 None
SNAP00000009084 ENSEMBL cdna:SNAP chromosome:CEL140:III:1804837:1808574:1 11/11 None
Y39A3CL.2 ENSEMBL cdna:known chromosome:CEL140:III:1789136:1806610:1 gene:Y39A3CL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1789135-1806610(+) 99.09 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-168
Ensembl Y39A3CL.2
Entrez Gene 189724 Entrez gene
SwissProt Q9N415 EMBL-EBI
WormBase CE25256 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.14198.1.S1_S_AT similar to KIAA0612 protein gga
CHICKEN:GGAAFFX.21491.1.S1_S_AT similar to KIAA0612 protein gga
CHICKEN:GGAAFFX.22861.1.S1_S_AT similar to KIAA0612 protein gga
CHICKEN:GGAAFFX.22861.2.S1_S_AT similar to KIAA0612 protein gga
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60519 Temporarily assigned gene name protein 168 [Caenorhabditis elegans] ref|NP_497459.1| Temporarily Assigned Gene name family member (tag-168) [Caenorhabditis elegans] 0.0
blast CAE69160 Hypothetical protein CBG15191 [Caenorhabditis briggsae] 0.0
blast AAF60519 Temporarily assigned gene name protein 168 [Caenorhabditis elegans] ref|NP_497459.1| Temporarily Assigned Gene name family member (tag-168) [Caenorhabditis elegans] 3.0E-76
blast XP_341072 PREDICTED: RIM-binding protein 2 [Rattus norvegicus] 5.0E-66
blast XP_341072 PREDICTED: RIM-binding protein 2 [Rattus norvegicus] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 9.8E-6
Pfam IPR001452 EMBL-EBI SH3 9.2E-9
Pfam IPR001452 EMBL-EBI SH3 9.8E-6
Pfam IPR001452 EMBL-EBI SH3 9.2E-9
Pfam IPR001452 EMBL-EBI SH3 9.2E-9
Sequence
Target Sequence 
>C. ELEGANS:187024_AT
agtttgactacgattccaggcagctgagcccgaatgtcgatgcggagcaggtcgagctat
cattccgtcaaggtgacatcataattgtgcttggcgatatggacgaagacggcttctaca
tgggagagctgaacggcctgcgcggcctagtcccgtccaacttcctccagccgcagcccc
tcaacaatctacttccgtcgcaaccgaccgagccaatgcggaaaggtgtcgcgttctcgg
atacacagcaaatgatgagaaaaccaatccgtcaatcatcacaaaccagcgccggaccat
cacaaggctccagcggaggccttgcaggcgcggtggcgagcgccgccgccgccagcggag
gcataaaaccggtggcgaagaagagctcggcaggaagcgccggcgccggtgcaaaacctc
tgacgaagaagaccagcgacgttggaaagtcgtctgctccaaacgctcgaaaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTGACTACGATTCCAGGCAGCT 107 63 3509 Antisense
CCAGGCAGCTGAGCCCGAATGTCGA 390 271 3524 Antisense
GATGCGGAGCAGGTCGAGCTATCAT 550 413 3547 Antisense
GAGCTATCATTCCGTCAAGGTGACA 556 387 3562 Antisense
ACATGGGAGAGCTGAACGGCCTGCG 483 107 3626 Antisense
AAAGGTGTCGCGTTCTCGGATACAC 435 121 3730 Antisense
TCCGTCAATCATCACAAACCAGCGC 224 593 3776 Antisense
CCATCACAAGGCTCCAGCGGAGGCC 29 269 3805 Antisense
GAAGAGCTCGGCAGGAAGCGCCGGC 476 337 3888 Antisense
GCCGGTGCAAAACCTCTGACGAAGA 52 285 3913 Antisense
GTCTGCTCCAAACGCTCGAAAAACT 402 471 3960 Antisense
Sequence Source Affymetrix Proprietary Database