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[187022_s_at]

Description Y77E11A.9 /REP_DB=WormBase Gene ID /WP=CE23085 /TR=Q9N4B3 /GB=AAF36070.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 32.4
(3)
A 		12.2
(-1.5)
A 		10.9
(-1.8)
A 		5.5
(-3)
A 		27
B 32.3
(3)
A 		24.9
(1.1)
A 		9.3
(-3)
A 		13.3
(-2)
A 		23
C 7.1
(-2.9)
A 		12.6
(-2.3)
A 		6.5
(-3)
A 		60.8
(3)
A 		54
avr 23.9
(2.1) 		16.6
(-0.4) 		8.9
(-3) 		26.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 31.4
(3)
A 		19.5
(0.1)
A 		23.6
(1.1)
A 		7.1
(-3)
A 		14.5
(-1.2)
A 		8.5
(-2.7)
A 		24
B 11.3
(-2.3)
A 		37.8
(3)
A 		8
(-3)
A 		11.7
(-2.3)
A 		15.1
(-1.6)
A 		23.3
(0.1)
A 		30
C 13.2
(-1.3)
A 		36.2
(2.5)
A 		39.4
(3)
A 		11.2
(-1.7)
A 		3.2
(-3)
A 		12.4
(-1.5)
A 		36
avr 18.6
(-0.6) 		31.2
(3) 		23.7
(0.9) 		10
(-3) 		10.9
(-2.7) 		14.7
(-1.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.8
(3)
A 		2.7
(-2)
A 		2.8
(-1.9)
A 		0.8
(-3)
A 		11
B 10.3
(3)
A 		6.2
(-0)
A 		2.2
(-3)
A 		2.8
(-2.6)
A 		8
C 2.4
(-2.9)
A 		3.6
(-2)
A 		2.3
(-3)
A 		10.3
(3)
A 		8
avr 8.2
(3) 		4.2
(-1.1) 		2.4
(-3) 		4.6
(-0.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.8
(1.7)
A 		6.9
(3)
A 		5.1
(0.9)
A 		1.8
(-3)
A 		4.4
(0.1)
A 		2.1
(-2.6)
A 		5
B 3.9
(-1.9)
A 		12.6
(3)
A 		1.9
(-3)
A 		3.1
(-2.3)
A 		6.1
(-0.6)
A 		8.7
(0.8)
A 		11
C 4.9
(-0.7)
A 		11
(3)
A 		10
(2.4)
A 		2.2
(-2.3)
A 		1
(-3)
A 		4.1
(-1.1)
A 		10
avr 4.9
(-1.1) 		10.2
(3) 		5.7
(-0.5) 		2.4
(-3) 		3.8
(-1.9) 		5
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10609
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.9 NCBI
Target Description Y77E11A.9 /REP_DB=WormBase Gene ID /WP=CE23085 /TR=Q9N4B3 /GB=AAF36070.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067679 NCBI Caenorhabditis elegans Y77E11A.9 (Y77E11A.9) mRNA, complete cds. 11/11 A 
SNAP00000027305 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1423094:1426348:-1 11/11 None
GENEFINDER00000027320 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1425481:1426732:-1 11/11 None
Y77E11A.9 ENSEMBL cdna:known chromosome:CEL140:IV:1425481:1426886:-1 gene:Y77E11A.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067678 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000027322 1/11 Cross Hyb Matching Probes None
Y77E11A.8 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1425486-1426884(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y77E11A.9
Entrez Gene 190737 Entrez gene
SwissProt Q9N4B3 EMBL-EBI
WormBase CE34432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 1.0E-180
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 1.0E-156
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 1.0E-116
blast AAF36078 Hypothetical protein Y77E11A.8 [Caenorhabditis elegans] ref|NP_500079.2| Y77E11A.8 [Caenorhabditis elegans] 9.0E-78
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 1.0E-63
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 3.0E-61
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 4.0E-61
blast CAE62118 Hypothetical protein CBG06158 [Caenorhabditis briggsae] 2.0E-48
Sequence
Target Sequence 
>C. ELEGANS:187022_S_AT
acaccttattgcatgtctccgaagggtttcacattccttagctccgttcccactttcgaa
cattacaattgggtgaccaactcgtccgcaatggcaaccgccaatgataattgtcttgtg
ctggtttttaatgggaacaatgcagtgaaagtggatgttaaatcatgcgaaggcaacttc
aatccccttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCTTATTGCATGTCTCCGAAGG 358 109 502 Antisense
ATTGCATGTCTCCGAAGGGTTTCAC 483 3 509 Antisense
GAAGGGTTTCACATTCCTTAGCTCC 49 195 522 Antisense
TCCGTTCCCACTTTCGAACATTACA 310 595 544 Antisense
ACAATTGGGTGACCAACTCGTCCGC 254 113 566 Antisense
GTCCGCAATGGCAACCGCCAATGAT 408 475 585 Antisense
GGCAACCGCCAATGATAATTGTCTT 609 533 594 Antisense
TGATAATTGTCTTGTGCTGGTTTTT 698 563 606 Antisense
GTCTTGTGCTGGTTTTTAATGGGAA 115 467 614 Antisense
GTGGATGTTAAATCATGCGAAGGCA 505 489 652 Antisense
GCGAAGGCAACTTCAATCCCCTTCC 433 287 668 Antisense
Sequence Source Affymetrix Proprietary Database