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[187021_at]

Description Y77E11A.9 /REP_DB=WormBase Gene ID /WP=CE23085 /TR=Q9N4B3 /GB=AAF36070.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 34.1
(-3)
A 		46.3
(-0.7)
A 		65.9
(3)
A 		55.6
(1.1)
A 		32
B 46.5
(1.9)
A 		49.1
(2.3)
A 		15.6
(-3)
A 		53.2
(3)
A 		38
C 49.6
(-0.2)
A 		52.9
(0)
A 		6.1
(-3)
A 		98.8
(3)
P 		93
avr 43.4
(-0.9) 		49.4
(0) 		29.2
(-3) 		69.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 57.2
(3)
A 		8
(-2.6)
A 		53.8
(2.6)
A 		31
(0)
A 		41.4
(1.2)
A 		4.6
(-3)
A 		53
B 25.9
(1.3)
A 		29.9
(2)
A 		4.5
(-3)
A 		34.7
(3)
A 		12.7
(-1.4)
A 		32.1
(2.5)
A 		30
C 37.5
(-0)
A 		47.9
(1.1)
A 		64.2
(3)
A 		11.4
(-3)
A 		27.8
(-1.1)
A 		16
(-2.5)
A 		53
avr 40.2
(2.8) 		28.6
(-0.2) 		40.8
(3) 		25.7
(-0.9) 		27.3
(-0.5) 		17.6
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.4
(-0.2)
A 		10.1
(-1.7)
A 		17.2
(3)
A 		8.1
(-3)
A 		9
B 14.8
(3)
A 		12.1
(1.6)
A 		3.6
(-3)
A 		11.3
(1.1)
A 		11
C 16.4
(2.9)
A 		15.2
(2.4)
A 		2.1
(-3)
A 		16.7
(3)
P 		15
avr 14.5
(3) 		12.5
(1.3) 		7.6
(-3) 		12
(0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.5
(1.9)
A 		2.8
(-2.1)
A 		11.7
(2.6)
A 		7.9
(0.6)
A 		12.5
(3)
A 		1.1
(-3)
A 		11
B 9
(1.3)
A 		10
(1.9)
A 		1.1
(-3)
A 		9.2
(1.5)
A 		5.2
(-0.7)
A 		12
(3)
A 		11
C 13.9
(2)
A 		14.6
(2.3)
A 		16.3
(3)
A 		2.3
(-3)
A 		9
(-0.1)
A 		5.3
(-1.7)
A 		14
avr 11.1
(3) 		9.1
(0.6) 		9.7
(1.3) 		6.5
(-2.5) 		8.9
(0.4) 		6.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10609
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.9 NCBI
Target Description Y77E11A.9 /REP_DB=WormBase Gene ID /WP=CE23085 /TR=Q9N4B3 /GB=AAF36070.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067679(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067679 NCBI Caenorhabditis elegans Y77E11A.9 (Y77E11A.9) mRNA, complete cds. 10/11 A 
GENEFINDER00000027320 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1425481:1426732:-1 10/11 None
Y77E11A.9 ENSEMBL cdna:known chromosome:CEL140:IV:1425481:1426886:-1 gene:Y77E11A.9 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027305 7/11 Cross Hyb Matching Probes None
SNAP00000027306 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1425486-1426884(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y77E11A.9
Entrez Gene 190737 Entrez gene
SwissProt Q9N4B3 EMBL-EBI
WormBase CE34432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 1.0E-180
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 1.0E-156
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 3.0E-61
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 4.0E-61
blast CAE62118 Hypothetical protein CBG06158 [Caenorhabditis briggsae] 2.0E-48
blast AAF36078 Hypothetical protein Y77E11A.8 [Caenorhabditis elegans] ref|NP_500079.2| Y77E11A.8 [Caenorhabditis elegans] 5.0E-43
Sequence
Target Sequence 
>C. ELEGANS:187021_AT
gtggtacatccccaggtcatttatatgtgaatgactatccgccatactttccttaccaca
gcgactactctatttacgcaacacctaccggatggaagatttcttctagaatgaatcact
cctgcatagacatgaccgacgtaattgttcgtgctgacaactcaatggtttgcctaatga
cgtttcgaaccagtaccgcgggatcattttcctacaatagatctctcgagttgtgcaaat
ctaaaggggttgatgccttattcggagcagtgtatccggaagactttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTACATCCCCAGGTCATTTATA 185 489 107 Antisense
TGAATGACTATCCGCCATACTTTCC 570 575 134 Antisense
ACTCTATTTACGCAACACCTACCGG 553 99 173 Antisense
GAATCACTCCTGCATAGACATGACC 467 327 219 Antisense
GACCGACGTAATTGTTCGTGCTGAC 113 381 240 Antisense
CGTGCTGACAACTCAATGGTTTGCC 493 245 256 Antisense
ATGGTTTGCCTAATGACGTTTCGAA 601 51 271 Antisense
GAACCAGTACCGCGGGATCATTTTC 523 343 293 Antisense
GATCTCTCGAGTTGTGCAAATCTAA 66 419 326 Antisense
GGGGTTGATGCCTTATTCGGAGCAG 466 497 352 Antisense
GGAGCAGTGTATCCGGAAGACTTTG 536 519 370 Antisense
Sequence Source Affymetrix Proprietary Database