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[187020_s_at]

Description Y55B1AL.3 /REP_DB=WormBase Gene ID /WP=CE27019 /TR=Q9N389 /GB=AAF59587.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 46      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 180.3
(3)
A 		166.2
(1.7)
A 		116.4
(-3)
A 		124.6
(-2.2)
A 		64
B 185.4
(3)
A 		143.7
(-0.7)
A 		154.1
(0.2)
A 		118.4
(-3)
A 		67
C 186.7
(3)
A 		152
(-1.5)
A 		140.5
(-3)
A 		181.1
(2.3)
A 		46
avr 184.1
(3) 		154
(-0.8) 		137
(-3) 		141.4
(-2.4) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 223
(3)
A 		146.4
(0.4)
A 		47.2
(-3)
A 		148.1
(0.4)
A 		160.4
(0.9)
A 		191.8
(1.9)
P 		176
B 176.5
(2.8)
A 		178.8
(3)
A 		120.7
(-2.1)
A 		110.3
(-3)
A 		135.5
(-0.8)
A 		158.2
(1.2)
P 		69
C 203
(3)
P 		175.4
(1.5)
A 		152.4
(0.2)
A 		93.7
(-3)
A 		159.2
(0.6)
A 		149.1
(0)
A 		109
avr 200.8
(3) 		166.9
(0.8) 		106.8
(-3) 		117.4
(-2.3) 		151.7
(-0.1) 		166.4
(0.8) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 65.6
(3)
A 		36.1
(-0.7)
A 		30.4
(-1.5)
A 		18.2
(-3)
A 		47
B 59.1
(3)
A 		35.5
(-1.2)
A 		35.7
(-1.1)
A 		25.2
(-3)
A 		34
C 61.8
(3)
A 		43.7
(-0.5)
A 		49
(0.5)
A 		30.5
(-3)
A 		31
avr 62.2
(3) 		38.4
(-0.8) 		38.4
(-0.8) 		24.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 41.1
(1.4)
A 		52.1
(3)
A 		10.3
(-3)
A 		37.6
(0.9)
A 		48.4
(2.5)
A 		46.7
(2.2)
P 		42
B 61.4
(3)
A 		59.5
(2.6)
A 		29.3
(-3)
A 		29.2
(-3)
A 		55.1
(1.8)
A 		59
(2.6)
P 		32
C 75.2
(3)
P 		53.5
(0.7)
A 		38.8
(-0.9)
A 		18.8
(-3)
A 		51.5
(0.5)
A 		49.9
(0.3)
A 		56
avr 59.2
(3) 		55
(2.2) 		26.1
(-3) 		28.5
(-2.6) 		51.7
(1.6) 		51.9
(1.7) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187020_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8319
Sequence Type Exemplar sequence
Representative Public ID Y55B1AL.3 NCBI
Target Description Y55B1AL.3 /REP_DB=WormBase Gene ID /WP=CE27019 /TR=Q9N389 /GB=AAF59587.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027740(11), NM_001027741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027740 NCBI Caenorhabditis elegans Y55B1AL.3a (Y55B1AL.3) mRNA, complete cds. 11/11 None
NM_001027741 NCBI Caenorhabditis elegans Y55B1AL.3b (Y55B1AL.3) mRNA, complete cds. 11/11 None
Y55B1AL.3b.1 ENSEMBL cdna:known chromosome:CEL140:III:577691:584192:-1 gene:Y55B1AL.3 11/11 None
Y55B1AL.3b.2 ENSEMBL cdna:known chromosome:CEL140:III:577844:584784:-1 gene:Y55B1AL.3 11/11 None
Y55B1AL.3a ENSEMBL cdna:known chromosome:CEL140:III:577844:587102:-1 gene:Y55B1AL.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:577843-580903(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y55B1AL.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59587 Hypothetical protein Y55B1AL.3a [Caenorhabditis elegans] ref|NP_001022911.1| Y55B1AL.3a [Caenorhabditis elegans] 0.0
blast CAE69218 Hypothetical protein CBG15258 [Caenorhabditis briggsae] 0.0
blast AAU20828 Hypothetical protein Y55B1AL.3b [Caenorhabditis elegans] ref|NP_001022912.1| Y55B1AL.3b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.9E-17
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.4E-19
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.9E-17
Sequence
Target Sequence 
>C. ELEGANS:187020_S_AT
gaagccatcattacacgtgtcgatttgaccgccggtactcctcgaatgcgactttacatt
gcgctgatgcttcaaaaaatctggaatcacgagccaatgtatacggtagccgaacgattt
ggcgtggagaagggatggcttcaggcgacactgcagtcatcgatttcacaggccgcgtca
attgctaaattttcagagaaaatcaccacgatgtggcctctacgaaaactacttcctgaa
cttgttcaacgactttctgaagctgcccagccggaacttttaccgttaatgacagttgat
ggaatcaagaaagcacgggccgcaattttattcaaagctggttataaaaccgttggaatg
attgcaagagcaaatccactgaaactagttcaagagctcggcacaattcggatggctcaa
gcgaattcaatcatcgccagcgcacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCATCATTACACGTGTCGATT 333 345 706 Antisense
GGTACTCCTCGAATGCGACTTTACA 147 505 739 Antisense
GACTTTACATTGCGCTGATGCTTCA 74 373 755 Antisense
GCGACACTGCAGTCATCGATTTCAC 605 287 850 Antisense
TTCACAGGCCGCGTCAATTGCTAAA 22 687 870 Antisense
AAATCACCACGATGTGGCCTCTACG 571 117 905 Antisense
GGCCTCTACGAAAACTACTTCCTGA 217 539 920 Antisense
TCAACGACTTTCTGAAGCTGCCCAG 316 631 951 Antisense
AAGCACGGGCCGCAATTTTATTCAA 573 89 1016 Antisense
AGCTCGGCACAATTCGGATGGCTCA 164 81 1100 Antisense
AATTCAATCATCGCCAGCGCACGAA 681 175 1129 Antisense
Sequence Source Affymetrix Proprietary Database