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[187019_at]

Description F37C12.10 /REP_DB=WormBase Gene ID /WP=CE00823 /TR=Q20126 /GB=AAC48296.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 48      4grp_high_8_8 > 43      6grp_highest_nonorm > 71      6grp_total > 51      4grp_total > 53      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 293.4
(3)
P 		222.7
(-1.2)
P 		191.5
(-3)
P 		224.5
(-1.1)
P 		102
B 249.8
(2)
P 		288.7
(3)
P 		228.1
(1.4)
P 		60.1
(-3)
P 		229
C 261.2
(3)
P 		251.9
(2.4)
P 		176.4
(-2.2)
P 		163.8
(-3)
P 		97
avr 268.1
(3) 		254.4
(2.3) 		198.7
(-0.5) 		149.5
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 377.3
(2)
P 		321.7
(0.8)
P 		380.1
(2)
P 		425.9
(3)
P 		249.1
(-0.8)
P 		147.6
(-3)
P 		278
B 282.7
(-0.5)
P 		387.4
(2)
P 		411.4
(2.6)
P 		428
(3)
P 		276.4
(-0.6)
P 		176.5
(-3)
P 		252
C 275.8
(-0.6)
P 		299.8
(-0.1)
P 		369.8
(1.3)
P 		454.1
(3)
P 		276.5
(-0.6)
P 		157.5
(-3)
P 		297
avr 311.9
(0.3) 		336.3
(0.8) 		387.1
(1.9) 		436
(3) 		267.3
(-0.7) 		160.5
(-3) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 106.8
(3)
P 		48.3
(-1.7)
P 		50.1
(-1.6)
P 		32.9
(-3)
P 		74
B 79.7
(3)
P 		71.3
(2.2)
P 		52.9
(0.6)
P 		12.8
(-3)
P 		67
C 86.5
(3)
P 		72.4
(1.6)
P 		61.5
(0.5)
P 		27.6
(-3)
P 		59
avr 91
(3) 		64
(0.6) 		54.8
(-0.3) 		24.4
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 69.6
(-0.4)
P 		114.4
(3)
P 		82.8
(0.6)
P 		108
(2.5)
P 		75.2
(0)
P 		35.9
(-3)
P 		79
B 98.4
(0.1)
P 		128.9
(3)
P 		99.9
(0.2)
P 		113.4
(1.5)
P 		112.3
(1.4)
P 		65.8
(-3)
P 		63
C 102.2
(3)
P 		91.5
(1.7)
P 		94.1
(2)
P 		91.3
(1.7)
P 		89.5
(1.5)
P 		52.7
(-3)
P 		50
avr 90.1
(0.9) 		111.6
(3) 		92.3
(1.1) 		104.2
(2.3) 		92.3
(1.1) 		51.5
(-3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7594
Sequence Type Exemplar sequence
Representative Public ID F37C12.10 NCBI
Target Description F37C12.10 /REP_DB=WormBase Gene ID /WP=CE00823 /TR=Q20126 /GB=AAC48296.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066177 NCBI Caenorhabditis elegans F37C12.10 (F37C12.10) mRNA, complete cds. 11/11 None
F37C12.10 ENSEMBL cdna:known chromosome:CEL140:III:7187813:7188471:-1 gene:F37C12.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030594 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7187810-7188469(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C12.10
Entrez Gene 185422 Entrez gene
SwissProt Q20126 EMBL-EBI
WormBase CE00823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48296 Hypothetical protein F37C12.10 [Caenorhabditis elegans] ref|NP_498578.1| F37C12.10 [Caenorhabditis elegans] 1.0E-103
blast CAE70149 Hypothetical protein CBG16612 [Caenorhabditis briggsae] 7.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498578.1 1 52-74
F37C12.10 1 52-74
Sequence
Target Sequence 
>C. ELEGANS:187019_AT
atcaactgatctcgaacttcttatgatgactgataacctttcgccaccgagactccattt
tccctttcttttcgaaactaataactttttccaccgagttgtcagctccttttttacagt
tttatcggtgttaacaatttggttcatcattatgaaagcgggatttattataattgctct
ttgttttctttctttattgcgaatcggttcaactgctccaatgggtgttactgtcaaagc
aagttatgatcaacagattataaatttaataggtcggtacgtaagatattgtagaatctt
atggatttgtccagatccaacactttttgcaatggtccaatcagctttgcaacaatatcg
aactgttgatgacatcaataaatcagttcaagatcaagtttcgggctaccgtaatgccat
ttggttagtgaacacgatcaactacagtaggacgacagctgacacggatcctggtcccaa
cagatcttcccagaatttgtgtttcgtgcaggcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACTGATCTCGAACTTCTTATG 383 27 57 Antisense
ATGATGACTGATAACCTTTCGCCAC 592 45 79 Antisense
TAACTTTTTCCACCGAGTTGTCAGC 157 639 138 Antisense
AGTTGTCAGCTCCTTTTTTACAGTT 147 65 153 Antisense
TGCTCTTTGTTTTCTTTCTTTATTG 9 581 231 Antisense
TTGCGAATCGGTTCAACTGCTCCAA 2 703 253 Antisense
CTGCTCCAATGGGTGTTACTGTCAA 501 237 269 Antisense
GATTTGTCCAGATCCAACACTTTTT 548 427 360 Antisense
GTTTCGGGCTACCGTAATGCCATTT 52 445 454 Antisense
TCCCAACAGATCTTCCCAGAATTTG 408 599 531 Antisense
AGAATTTGTGTTTCGTGCAGGCGCC 41 77 548 Antisense
Sequence Source Affymetrix Proprietary Database