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[187018_at]

Description Y55B1AL.2 /REP_DB=WormBase Gene ID /WP=CE22497 /TR=Q9N390 /GB=AAF59588.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 74      6grp_total > 65      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 442.8
(-3)
P 		504.7
(-1.4)
P 		504.2
(-1.4)
P 		670.4
(3)
P 		228
B 529.2
(-0.5)
P 		415
(-3)
P 		432.4
(-2.6)
P 		690.6
(3)
P 		276
C 442.9
(-3)
P 		468.7
(-2.6)
P 		532
(-1.7)
P 		859.4
(3)
P 		417
avr 471.6
(-2.8) 		462.8
(-3) 		489.5
(-2.4) 		740.1
(3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 533.2
(-3)
P 		714.7
(-0.4)
P 		947.8
(3)
P 		856.7
(1.7)
P 		623
(-1.7)
P 		731.8
(-0.1)
P 		415
B 591.3
(-2.5)
P 		576.9
(-2.8)
P 		884.5
(3)
P 		566.4
(-3)
P 		721.3
(-0.1)
P 		789
(1.2)
P 		318
C 683.9
(-1.6)
P 		674.5
(-1.8)
P 		600.9
(-3)
P 		709.7
(-1.2)
P 		682.1
(-1.6)
P 		956.6
(3)
P 		356
avr 602.8
(-3) 		655.4
(-1.6) 		811.1
(2.6) 		710.9
(-0.1) 		675.5
(-1) 		825.8
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 161.2
(3)
P 		109.6
(-1.9)
P 		131.8
(0.2)
P 		98.1
(-3)
P 		63
B 168.7
(3)
P 		102.5
(-2.8)
P 		100.2
(-3)
P 		147.2
(1.1)
P 		69
C 146.6
(-1.6)
P 		134.8
(-3)
P 		185.4
(3)
P 		144.9
(-1.8)
P 		51
avr 158.8
(3) 		115.6
(-3) 		139.1
(0.3) 		130.1
(-1) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 98.3
(-3)
P 		254.2
(3)
P 		206.4
(1.2)
P 		217.3
(1.6)
P 		188
(0.5)
P 		178.2
(0.1)
P 		156
B 205.8
(-0.7)
P 		192
(-1.3)
P 		214.8
(-0.3)
P 		150
(-3)
P 		293.1
(3)
P 		294.2
(3)
P 		144
C 253.5
(0.7)
P 		205.8
(-0.9)
P 		152.9
(-2.7)
P 		142.7
(-3)
P 		220.7
(-0.4)
P 		320.2
(3)
P 		178
avr 185.9
(-2) 		217.3
(0) 		191.4
(-1.6) 		170
(-3) 		233.9
(1.1) 		264.2
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8220
Sequence Type Exemplar sequence
Representative Public ID Y55B1AL.2 NCBI
Target Description Y55B1AL.2 /REP_DB=WormBase Gene ID /WP=CE22497 /TR=Q9N390 /GB=AAF59588.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064811 NCBI Caenorhabditis elegans Y55B1AL.2 (Y55B1AL.2) mRNA, complete cds. 11/11 None
GENEFINDER00000032741 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:577041:577558:-1 11/11 None
Y55B1AL.2 ENSEMBL cdna:known chromosome:CEL140:III:577041:577558:-1 gene:Y55B1AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:577040-577558(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1AL.2
Entrez Gene 190298 Entrez gene
SwissProt Q9N390 EMBL-EBI
WormBase CE22497 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59588 Hypothetical protein Y55B1AL.2 [Caenorhabditis elegans] ref|NP_497212.1| Y55B1AL.2 [Caenorhabditis elegans] 4.0E-33
blast CAE69217 Hypothetical protein CBG15257 [Caenorhabditis briggsae] 3.0E-30
blast NP_001017298 general transcription factor IIH, polypeptide 5 [Xenopus tropicalis] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR009400 EMBL-EBI REX1 DNA Repair 1.7E-40
Sequence
Target Sequence 
>C. ELEGANS:187018_AT
gagtgttggtgacgagtgatccggcttttcgtcaacttctgatccatttggacgactcca
gacagctcggatccaagttcattgtcagggaactcgacgatacgcatttgttcatcgaaa
aggagatcgttccaatgctggagaacaaggtggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGTTGGTGACGAGTGATCCGGC 580 399 32 Antisense
GACGAGTGATCCGGCTTTTCGTCAA 481 379 42 Antisense
ACTTCTGATCCATTTGGACGACTCC 589 103 66 Antisense
ATTTGGACGACTCCAGACAGCTCGG 332 15 77 Antisense
CAGACAGCTCGGATCCAAGTTCATT 645 203 90 Antisense
GCTCGGATCCAAGTTCATTGTCAGG 288 299 96 Antisense
TTGTCAGGGAACTCGACGATACGCA 269 677 113 Antisense
ACTCGACGATACGCATTTGTTCATC 54 99 123 Antisense
GATACGCATTTGTTCATCGAAAAGG 174 425 130 Antisense
AAAGGAGATCGTTCCAATGCTGGAG 629 121 150 Antisense
CAATGCTGGAGAACAAGGTGGAACA 269 181 164 Antisense
Sequence Source Affymetrix Proprietary Database