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[187017_at]

Description Y76B12C.1 /REP_DB=WormBase Gene ID /WP=CE25605 /TR=Q9N4C1 /GB=AAF36062.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 142.1
(1.3)
P 		74
(-3)
A 		149.1
(1.7)
A 		168.9
(3)
A 		95
B 134.3
(3)
M 		93.7
(-3)
M 		108.8
(-0.8)
A 		107.1
(-1)
A 		41
C 140.1
(3)
A 		117.4
(0.2)
A 		91
(-3)
A 		138.3
(2.8)
P 		49
avr 138.8
(3) 		95
(-3) 		116.3
(-0.1) 		138.1
(2.9) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 130.9
(3)
P 		75.6
(-0.5)
A 		44.1
(-2.5)
A 		84.4
(0)
A 		76.9
(-0.4)
M 		36.9
(-3)
A 		94
B 106.6
(3)
A 		95.3
(1.8)
P 		74.7
(-0.4)
A 		57
(-2.2)
A 		55.8
(-2.3)
A 		49.6
(-3)
P 		57
C 140.3
(3)
P 		87.4
(-0.9)
P 		102.4
(0.2)
A 		64
(-2.6)
A 		94
(-0.4)
A 		58.6
(-3)
A 		82
avr 125.9
(3) 		86.1
(-0.1) 		73.7
(-1) 		68.5
(-1.4) 		75.6
(-0.9) 		48.4
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 51.7
(3)
P 		16.1
(-3)
A 		39
(0.9)
A 		24.7
(-1.6)
A 		36
B 42.8
(3)
M 		23.1
(-2.9)
M 		25.2
(-2.3)
A 		22.8
(-3)
A 		20
C 46.4
(3)
A 		33.8
(-0.3)
A 		31.7
(-0.8)
A 		23.3
(-3)
P 		23
avr 47
(3) 		24.3
(-2.8) 		32
(-0.8) 		23.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 24.1
(2.1)
P 		26.9
(3)
A 		9.6
(-2.8)
A 		21.4
(1.2)
A 		23.2
(1.8)
M 		9
(-3)
A 		18
B 37.1
(3)
A 		31.7
(1.5)
P 		18.1
(-2.2)
A 		15.1
(-3)
A 		22.7
(-0.9)
A 		18.5
(-2.1)
P 		22
C 52
(3)
P 		26.7
(-0.9)
P 		26.1
(-1)
A 		12.9
(-3)
A 		30.4
(-0.3)
A 		19.6
(-2)
A 		39
avr 37.7
(3) 		28.4
(0.5) 		17.9
(-2.4) 		16.5
(-2.8) 		25.4
(-0.4) 		15.7
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10395
Sequence Type Exemplar sequence
Representative Public ID Y76B12C.1 NCBI
Target Description Y76B12C.1 /REP_DB=WormBase Gene ID /WP=CE25605 /TR=Q9N4C1 /GB=AAF36062.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067757 NCBI Caenorhabditis elegans Y76B12C.1 (Y76B12C.1) mRNA, complete cds. 11/11 None
SNAP00000007756 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2037244:2043190:1 11/11 None
GENEFINDER00000007769 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2037244:2043190:1 11/11 None
Y76B12C.1 ENSEMBL cdna:known chromosome:CEL140:IV:2037244:2043190:1 gene:Y76B12C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2037249-2043196(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y76B12C.1
Entrez Gene 190732 Entrez gene
SwissProt Q9N4C1 EMBL-EBI
WormBase CE25605 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36062 Hypothetical protein Y76B12C.1 [Caenorhabditis elegans] ref|NP_500158.1| Y76B12C.1 [Caenorhabditis elegans] 0.0
blast CAE70287 Hypothetical protein CBG16807 [Caenorhabditis briggsae] 0.0
blast CAE74702 Hypothetical protein CBG22517 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.2E-20
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.2E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500158.1 4 232-254,364-386,494-516,537-559
Y76B12C.1 4 232-254,364-386,494-516,537-559
GENEFINDER00000007769 4 232-254,364-386,494-516,537-559
Sequence
Target Sequence 
>C. ELEGANS:187017_AT
gcctgctggctgtaatcgatgacgataccggagtcgaacttgacagtctcaaggagggcc
acacattcggagaactctcaattgtacaggttaaggggaacatcctgggcgatcggagga
gtgtctcgctgcgaagtgtgggatactcggatgtttacgtgcttcaccaggatgatgtga
cacggttgttgcaggagtatccagaggagagagttagactaatggagaatgctcgccgaa
tgcttcactcaagaggtttgctcgagacaaatgagcttggagagatgtgtgaaacagacg
atggactggatgatgaagcaatgctcgagttcctatccgtcgatgagcagctcaatcgcc
tggagaacatcatcgactctattgataccgacctggctaatatgataacctctttctcgt
acaactcggttgcgtacaagaagcgtgtcaccgcgttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTGCTGGCTGTAATCGATGACGA 408 281 1961 Antisense
GTCTCAAGGAGGGCCACACATTCGG 143 469 2006 Antisense
GGCGATCGGAGGAGTGTCTCGCTGC 55 543 2068 Antisense
GTCTCGCTGCGAAGTGTGGGATACT 218 471 2083 Antisense
ATACTCGGATGTTTACGTGCTTCAC 688 23 2103 Antisense
GGAGAATGCTCGCCGAATGCTTCAC 592 519 2184 Antisense
CGAGTTCCTATCCGTCGATGAGCAG 231 249 2286 Antisense
GCAGCTCAATCGCCTGGAGAACATC 323 313 2307 Antisense
TCGACTCTATTGATACCGACCTGGC 549 601 2333 Antisense
TATGATAACCTCTTTCTCGTACAAC 266 657 2361 Antisense
ACAAGAAGCGTGTCACCGCGTTGGA 689 109 2396 Antisense
Sequence Source Affymetrix Proprietary Database