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[187016_at]

Description Y57A10A.15 /REP_DB=WormBase Gene ID /WP=CE25501 /TR=Q9U208 /GB=CAB60771.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 79      4grp_high_8_8 > 42      6grp_total > 88      4grp_total > 53      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 158.3
(0.8)
P 		145.6
(-0.8)
P 		127.5
(-3)
P 		176.5
(3)
P 		49
B 155.4
(1.9)
P 		169
(3)
P 		150.4
(1.5)
A 		95.4
(-3)
P 		74
C 182.5
(3)
P 		134.3
(-0.4)
M 		146.7
(0.4)
P 		98.4
(-3)
P 		84
avr 165.4
(3) 		149.6
(0.7) 		141.5
(-0.4) 		123.4
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 132.1
(-3)
P 		160
(-0.2)
P 		142.7
(-1.9)
P 		133
(-2.9)
P 		143
(-1.9)
P 		190.9
(3)
P 		59
B 159.6
(-0.9)
P 		175.1
(0.7)
P 		147.2
(-2.1)
P 		137.9
(-3)
P 		161.8
(-0.6)
P 		198.9
(3)
P 		61
C 153.6
(-1.3)
P 		137.1
(-3)
P 		177.8
(1.3)
P 		194
(3)
A 		190.2
(2.6)
P 		142.3
(-2.5)
P 		57
avr 148.4
(-3) 		157.4
(-1.1) 		155.9
(-1.4) 		155
(-1.6) 		165
(0.4) 		177.4
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 57.6
(3)
P 		31.6
(-1.9)
P 		33.3
(-1.6)
P 		25.8
(-3)
P 		32
B 49.6
(3)
P 		41.7
(1.4)
P 		34.8
(-0)
A 		20.3
(-3)
P 		29
C 60.4
(3)
P 		38.6
(0)
M 		51.1
(1.7)
P 		16.6
(-3)
P 		44
avr 55.9
(3) 		37.3
(-0.2) 		39.7
(0.2) 		20.9
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 24.3
(-3)
P 		56.9
(3)
P 		31.1
(-1.7)
P 		33.7
(-1.3)
P 		43.2
(0.5)
P 		46.5
(1.1)
P 		33
B 55.6
(0.1)
P 		58.3
(0.5)
P 		35.8
(-3)
P 		36.5
(-2.9)
P 		65.8
(1.7)
P 		74.2
(3)
P 		38
C 56.9
(1.8)
P 		41.8
(-2.3)
P 		45.3
(-1.3)
P 		39
(-3)
A 		61.5
(3)
P 		47.6
(-0.7)
P 		23
avr 45.6
(-0.3) 		52.3
(1.7) 		37.4
(-2.7) 		36.4
(-3) 		56.8
(3) 		56.1
(2.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3061
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.15 NCBI
Target Description Y57A10A.15 /REP_DB=WormBase Gene ID /WP=CE25501 /TR=Q9U208 /GB=CAB60771.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064191 NCBI Caenorhabditis elegans Y57A10A.15 (Y57A10A.15) mRNA, complete cds. 11/11 None
SNAP00000026022 ENSEMBL cdna:SNAP chromosome:CEL140:II:12177023:12199029:-1 11/11 None
GENEFINDER00000026063 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12189780:12199862:-1 11/11 None
Y57A10A.15 ENSEMBL cdna:known chromosome:CEL140:II:12189780:12199862:-1 gene:Y57A10A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12189776-12199859(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.15
Entrez Gene 174860 Entrez gene
SwissProt Q9U208 EMBL-EBI
WormBase CE25501 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6260 DNA replication inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5760 gamma DNA polymerase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3887 DNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
3895 gamma DNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60771 Hypothetical protein Y57A10A.15 [Caenorhabditis elegans] ref|NP_496592.1| Y57A10A.15 [Caenorhabditis elegans] 0.0
blast CAE73467 Hypothetical protein CBG20918 [Caenorhabditis briggsae] 0.0
blast T31635 hypothetical protein Y57A10A.m - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001098 EMBL-EBI DNA-directed DNA polymerase 4.0E-7
Pfam IPR001098 EMBL-EBI DNA-directed DNA polymerase 2.8E-14
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 9.0E-12
Pfam IPR001098 EMBL-EBI DNA-directed DNA polymerase 4.0E-7
Pfam IPR001098 EMBL-EBI DNA-directed DNA polymerase 2.8E-14
Pfam IPR001098 EMBL-EBI DNA-directed DNA polymerase 2.8E-14
Sequence
Target Sequence 
>C. ELEGANS:187016_AT
gaaccggatagcctaatctactcgatctatgagaatcctgatgagccacgacgccttttc
gtcggcggatatgaatcttcaacattcaatttcctggagacctcagcagcggctcacgat
ttgagaactcctattctgggatgccaaattgcggattcacttggaaaattgcctgaagga
acgccggattcagcgtattttgatcgaaaatataagagatccgttatgaattggattgta
caatcgtcggcagttgatttcctccatctcctgctcgtctcaatgcaatggctctgtgac
acttacaaaatcgatgcccgtttcgtcatttcgattcacgacgaggtccgatacatgtgc
aaagagccggatgctccgagacttgctcttgctctgcagctttcgaatttgcttgtgaga
gcctatatttcacagagagtcggaatatgtcagctgcctaataccgttgccttcttctct
caagtagattgtgatacagtactccgtaaagaagtcgacacggagagcatcaatccggac
ggctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGGATAGCCTAATCTACTCGA 259 347 2617 Antisense
TGAGAATCCTGATGAGCCACGACGC 481 569 2646 Antisense
TCAATTTCCTGGAGACCTCAGCAGC 453 633 2702 Antisense
GAGAACTCCTATTCTGGGATGCCAA 688 391 2739 Antisense
GCTCGTCTCAATGCAATGGCTCTGT 602 299 2889 Antisense
CAAAATCGATGCCCGTTTCGTCATT 207 191 2922 Antisense
GACGAGGTCCGATACATGTGCAAAG 264 379 2956 Antisense
AAGAGCCGGATGCTCCGAGACTTGC 653 153 2978 Antisense
CTCTTGCTCTGCAGCTTTCGAATTT 393 229 3002 Antisense
ATATGTCAGCTGCCTAATACCGTTG 69 21 3061 Antisense
GGAGAGCATCAATCCGGACGGCTCC 111 519 3138 Antisense
Sequence Source Affymetrix Proprietary Database