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[187014_at]

Description F35D11.11 /REP_DB=WormBase Gene ID /WP=CE02714 /TR=Q20042 /GB=AAA68757.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      6grp_total > 59      4grp_total > 13      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 104.1
(-0.5)
P 		46.2
(-2.8)
A 		40.4
(-3)
A 		191.6
(3)
P 		151
B 107.1
(-1)
M 		102.8
(-1.1)
P 		52.3
(-3)
A 		212.8
(3)
P 		161
C 147.9
(2.4)
A 		96.3
(-1)
A 		65.8
(-3)
A 		157.8
(3)
A 		92
avr 119.7
(-0) 		81.8
(-1.7) 		52.8
(-3) 		187.4
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 181.1
(2.3)
M 		111
(-1.8)
P 		91.5
(-3)
P 		135.2
(-0.4)
P 		192.9
(3)
P 		180.3
(2.3)
P 		101
B 163.7
(0)
P 		105.4
(-3)
P 		125.2
(-2)
A 		111.6
(-2.7)
P 		149.7
(-0.7)
P 		220.3
(3)
P 		115
C 157.9
(-0.3)
P 		161.8
(-0.1)
P 		145.1
(-0.9)
P 		126.2
(-1.8)
M 		100.6
(-3)
P 		227.8
(3)
P 		127
avr 167.6
(0.2) 		126.1
(-2.6) 		120.6
(-3) 		124.3
(-2.8) 		147.7
(-1.2) 		209.5
(3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 37.9
(3)
P 		10
(-3)
A 		10.6
(-2.9)
A 		28
(0.9)
P 		28
B 34.2
(1)
M 		25.4
(-0.6)
P 		12.1
(-3)
A 		45.3
(3)
P 		33
C 49
(3)
A 		27.7
(-1.9)
A 		22.9
(-3)
A 		26.6
(-2.1)
A 		26
avr 40.4
(3) 		21
(-1.6) 		15.2
(-3) 		33.3
(1.3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 33.4
(-0.9)
M 		39.5
(0.1)
P 		19.9
(-3)
P 		34.3
(-0.7)
P 		58.2
(3)
P 		43.9
(0.8)
P 		38
B 57
(0.1)
P 		35.1
(-2.4)
P 		30.4
(-2.9)
A 		29.6
(-3)
P 		60.8
(0.6)
P 		82.1
(3)
P 		53
C 58.5
(0.9)
P 		49.4
(-0.2)
P 		36.9
(-1.6)
P 		25.4
(-3)
M 		32.5
(-2.2)
P 		76.3
(3)
P 		51
avr 49.6
(0.2) 		41.3
(-1.1) 		29.1
(-3) 		29.8
(-2.9) 		50.5
(0.4) 		67.4
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4419
Sequence Type Exemplar sequence
Representative Public ID F35D11.11 NCBI
Target Description F35D11.11 /REP_DB=WormBase Gene ID /WP=CE02714 /TR=Q20042 /GB=AAA68757.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062418(11), NM_062419(11), NM_182228(11), NM_062420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062418 NCBI Caenorhabditis elegans F35D11.11b (F35D11.11) mRNA, complete cds. 11/11 None
NM_062419 NCBI Caenorhabditis elegans F35D11.11c (F35D11.11) mRNA, complete cds. 11/11 None
NM_182228 NCBI Caenorhabditis elegans F35D11.11d (F35D11.11) mRNA, complete cds. 11/11 None
NM_062420 NCBI Caenorhabditis elegans F35D11.11a (F35D11.11) mRNA, complete cds. 11/11 None
SNAP00000013546 ENSEMBL cdna:SNAP chromosome:CEL140:II:4628112:4637790:-1 11/11 None
GENEFINDER00000013554 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4627981:4637790:-1 11/11 None
F35D11.11b ENSEMBL cdna:known chromosome:CEL140:II:4627860:4637616:-1 gene:F35D11.11 11/11 A 
F35D11.11c ENSEMBL cdna:known chromosome:CEL140:II:4627869:4637616:-1 gene:F35D11.11 11/11 A 
F35D11.11d ENSEMBL cdna:known chromosome:CEL140:II:4627981:4636567:-1 gene:F35D11.11 11/11 None
F35D11.11a ENSEMBL cdna:known chromosome:CEL140:II:4628905:4637616:-1 gene:F35D11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4629418-4637615(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35D11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02510 Hypothetical protein F35D11.11b [Caenorhabditis elegans] ref|NP_494819.1| F35D11.11b [Caenorhabditis elegans] 0.0
blast AAL02511 Hypothetical protein F35D11.11c [Caenorhabditis elegans] ref|NP_494820.1| F35D11.11c [Caenorhabditis elegans] 0.0
blast AAA68757 Hypothetical protein F35D11.11a [Caenorhabditis elegans] ref|NP_494821.1| F35D11.11a [Caenorhabditis elegans] 0.0
blast AAM98022 Hypothetical protein F35D11.11d [Caenorhabditis elegans] ref|NP_872028.1| F35D11.11d [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187014_AT
gaaaaggccgttcgagaaaccatgaacgaacgtcgtgccatcgacaaatctctcgcgtca
atggaacgagaaaatcaacagttgtataggaattgtgctcaacttcaagctcaaattcag
aatctggagcgcgacgccggaaatcggtcggtaaccaagttggctaaggagcattcattg
ctcgaagctcgaattgcagctttaattgaagaaaaacgtcagctccaatcaatgcttgac
caaaaagacgccaactactctcacaagcgaaaactcttagaatcccaaatccagttgctc
cgcgagcaactcgaagccgaacgccgaaagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGGCCGTTCGAGAAACCATGA 502 353 5089 Antisense
GAACGAACGTCGTGCCATCGACAAA 517 343 5112 Antisense
CATCGACAAATCTCTCGCGTCAATG 573 211 5127 Antisense
GTATAGGAATTGTGCTCAACTTCAA 179 453 5172 Antisense
AATTCAGAATCTGGAGCGCGACGCC 120 177 5202 Antisense
AGCGCGACGCCGGAAATCGGTCGGT 219 75 5216 Antisense
AGCATTCATTGCTCGAAGCTCGAAT 241 79 5258 Antisense
GAAAAACGTCAGCTCCAATCAATGC 612 353 5299 Antisense
GCCAACTACTCTCACAAGCGAAAAC 687 277 5338 Antisense
TTAGAATCCCAAATCCAGTTGCTCC 625 679 5365 Antisense
ACTCGAAGCCGAACGCCGAAAGCGT 131 97 5397 Antisense
Sequence Source Affymetrix Proprietary Database