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[187013_at]

Description Y77E11A.2 /REP_DB=WormBase Gene ID /WP=CE25616 /TR=Q9N4A9 /GB=AAF36072.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 48      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 87      6grp_total > 49      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3037
1 2 3 4 range
A 751.2
(-2.4)
P 		439.7
(-3)
P 		455.6
(-3)
P 		3476.9
(3)
P 		3037
B 827.1
(-2.3)
P 		530.6
(-2.9)
P 		467.7
(-3)
P 		3422.2
(3)
P 		2955
C 871.3
(-2.2)
P 		514.8
(-2.9)
P 		469.5
(-3)
P 		3310.7
(3)
P 		2841
avr 816.5
(-2.3) 		495
(-2.9) 		464.3
(-3) 		3403.3
(3) 		2939

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 1321.5
(3)
P 		985.8
(-1.5)
P 		1029.3
(-0.9)
P 		869.1
(-3)
P 		1139.9
(0.6)
P 		1278.9
(2.4)
P 		452
B 1454
(3)
P 		1091.3
(-2)
P 		1086.9
(-2.1)
P 		1018.5
(-3)
P 		1270.9
(0.5)
P 		1327
(1.3)
P 		436
C 1166.9
(2.1)
P 		1070.7
(0.7)
P 		826.4
(-3)
P 		916.7
(-1.6)
P 		951
(-1.1)
P 		1224.1
(3)
P 		398
avr 1314.1
(3) 		1049.3
(-1.2) 		980.9
(-2.3) 		934.8
(-3) 		1120.6
(-0.1) 		1276.7
(2.4) 		379
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 634
1 2 3 4 range
A 273.5
(-0.4)
P 		95.4
(-3)
P 		119.1
(-2.7)
P 		508.9
(3)
P 		414
B 263.8
(-1.5)
P 		131
(-2.8)
P 		108.4
(-3)
P 		729.3
(3)
P 		621
C 288.4
(-0.9)
P 		148
(-3)
P 		163.6
(-2.8)
P 		558.2
(3)
P 		410
avr 275.2
(-1.1) 		124.8
(-3) 		130.4
(-2.9) 		598.8
(3) 		474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 243.6
(-1.9)
P 		350.6
(3)
P 		224.2
(-2.8)
P 		220.4
(-3)
P 		344
(2.7)
P 		311.4
(1.2)
P 		130
B 505.9
(2.8)
P 		363.2
(-0.6)
P 		263.9
(-3)
P 		269.8
(-2.9)
P 		516.4
(3)
P 		494.8
(2.5)
P 		253
C 432.5
(3)
P 		326.7
(0.4)
P 		210.3
(-2.4)
P 		184.3
(-3)
P 		307.7
(-0)
P 		409.8
(2.5)
P 		248
avr 394
(2.6) 		346.8
(1.1) 		232.8
(-2.7) 		224.8
(-3) 		389.4
(2.5) 		405.3
(3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10397
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.2 NCBI
Target Description Y77E11A.2 /REP_DB=WormBase Gene ID /WP=CE25616 /TR=Q9N4A9 /GB=AAF36072.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067683 NCBI Caenorhabditis elegans Y77E11A.2 (Y77E11A.2) mRNA, complete cds. 11/11 None
SNAP00000027313 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1457730:1459362:1 11/11 None
GENEFINDER00000027328 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1457083:1459362:1 11/11 None
Y77E11A.2 ENSEMBL cdna:known chromosome:CEL140:IV:1457074:1459513:1 gene:Y77E11A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1455942-1459368(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y77E11A.2
Entrez Gene 176954 Entrez gene
SwissProt Q9N4A9 EMBL-EBI
WormBase CE23076 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3951 NAD+ kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36072 Hypothetical protein Y77E11A.2 [Caenorhabditis elegans] ref|NP_500084.2| Y77E11A.2 [Caenorhabditis elegans] 0.0
blast CAE68251 Hypothetical protein CBG13928 [Caenorhabditis briggsae] 1.0E-172
blast AAF36072 Hypothetical protein Y77E11A.2 [Caenorhabditis elegans] ref|NP_500084.2| Y77E11A.2 [Caenorhabditis elegans] 1.0E-167
blast CAE68251 Hypothetical protein CBG13928 [Caenorhabditis briggsae] 1.0E-140
blast CAA19456 Hypothetical protein Y17G7B.10b [Caenorhabditis elegans] ref|NP_496566.1| Y17G7B.10b [Caenorhabditis elegans] 9.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002504 EMBL-EBI ATP-NAD kinase 1.4E-17
Pfam IPR002504 EMBL-EBI ATP-NAD kinase 1.4E-17
Sequence
Target Sequence 
>C. ELEGANS:187013_AT
atcgagcgtctggtctctggaaacttgaagtgggtgcagaggacgaggatacgggtaaca
gtaaaggaatcccggaactcgattttctcattgaagaggtctgaaaaatcaacaaacctc
gccctgaacgaggtgttcatcggagaggatgaagccgccaaagtctcaacctacaatatt
tccatcgacgattcgcagacagtcaagcaaaagtcctccgggttgattgtgtcgactggg
accggatcgacgagttggtacctcggaatgaacaggatcgatgagaatgcgacgacgtca
gtgttggaggcactgcaatcacttggcgtggatgtgccgatcacaaggaatttggtggag
aaggtggtgaattcggtgaatgagaagatcccgttcgagccagatcatcctagtttcgcc
ttctcaatccgtgagccgatcttcaacgccacctacaaacgcacggcgacccgcggattc
gccagaaagatcaaactcgaatcccgatgcaccaacggatacctggtccttgacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGAGCGTCTGGTCTCTGGAAACT 67 37 703 Antisense
GGAATCCCGGAACTCGATTTTCTCA 369 529 768 Antisense
GTCTCAACCTACAATATTTCCATCG 515 469 865 Antisense
AAAGTCCTCCGGGTTGATTGTGTCG 666 121 912 Antisense
GATTGTGTCGACTGGGACCGGATCG 261 435 927 Antisense
GACCGGATCGACGAGTTGGTACCTC 254 383 942 Antisense
GGCACTGCAATCACTTGGCGTGGAT 705 535 1011 Antisense
CGAGCCAGATCATCCTAGTTTCGCC 388 251 1098 Antisense
TCAATCCGTGAGCCGATCTTCAACG 594 629 1126 Antisense
GATCAAACTCGAATCCCGATGCACC 371 421 1191 Antisense
CCAACGGATACCTGGTCCTTGACGG 167 275 1214 Antisense
Sequence Source Affymetrix Proprietary Database