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[187012_s_at]

Description Y17G7B.18B /REP_DB=WormBase Gene ID /WP=CE19053 /TR=Q9XXH6 /GB=CAA19466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 67      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 195.8
(0.7)
P 		170.5
(-3)
P 		211.7
(3)
P 		210.8
(2.9)
P 		41
B 187.9
(1.7)
P 		194
(3)
P 		182.7
(0.5)
P 		166.6
(-3)
P 		27
C 225.9
(2.5)
P 		210.6
(0.9)
P 		231.2
(3)
P 		173.1
(-3)
P 		58
avr 203.2
(1.7) 		191.7
(-1) 		208.5
(3) 		183.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 162.8
(-0.8)
P 		157.2
(-1.2)
P 		161.3
(-0.9)
P 		128.4
(-3)
P 		135.4
(-2.6)
P 		223.8
(3)
P 		95
B 187
(3)
P 		144.4
(-1.1)
P 		139.5
(-1.6)
P 		132.1
(-2.3)
P 		124.4
(-3)
P 		185.1
(2.8)
P 		63
C 139.2
(-3)
P 		146
(-2.4)
P 		165.3
(-0.9)
P 		139.1
(-3)
P 		174.7
(-0.1)
P 		212.9
(3)
P 		74
avr 163
(-0.6) 		149.2
(-1.7) 		155.4
(-1.2) 		133.2
(-3) 		144.8
(-2.1) 		207.3
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 71.3
(3)
P 		37
(-2.1)
P 		55.3
(0.6)
P 		30.9
(-3)
P 		40
B 59.9
(3)
P 		47.9
(0)
P 		42.3
(-1.3)
P 		35.5
(-3)
P 		24
C 74.8
(2.3)
P 		60.6
(0.7)
P 		80.6
(3)
P 		29.2
(-3)
P 		51
avr 68.7
(3) 		48.5
(-0.3) 		59.4
(1.5) 		31.9
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 30
(-3)
P 		55.9
(3)
P 		35.1
(-1.8)
P 		32.6
(-2.4)
P 		40.9
(-0.5)
P 		54.5
(2.7)
P 		26
B 65.1
(2.3)
P 		48.1
(-0.6)
P 		33.9
(-3)
P 		35
(-2.8)
P 		50.5
(-0.2)
P 		69
(3)
P 		35
C 51.6
(0.3)
P 		44.5
(-0.7)
P 		42.1
(-1)
P 		28
(-3)
P 		56.5
(0.9)
P 		71.3
(3)
P 		43
avr 48.9
(0.1) 		49.5
(0.2) 		37
(-2.1) 		31.9
(-3) 		49.3
(0.2) 		64.9
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187012_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3249
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.18B NCBI
Target Description Y17G7B.18B /REP_DB=WormBase Gene ID /WP=CE19053 /TR=Q9XXH6 /GB=CAA19466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064171(11), NM_064172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064171 NCBI Caenorhabditis elegans Y17G7B.18b (Y17G7B.18) mRNA, complete cds. 11/11 None
NM_064172 NCBI Caenorhabditis elegans Y17G7B.18a (Y17G7B.18) mRNA, complete cds. 11/11 None
SNAP00000030332 ENSEMBL cdna:SNAP chromosome:CEL140:II:12103927:12107750:-1 11/11 None
Y17G7B.18a ENSEMBL cdna:known chromosome:CEL140:II:12103320:12107760:-1 gene:Y17G7B.18 11/11 None
Y17G7B.18b ENSEMBL cdna:known chromosome:CEL140:II:12103927:12107765:-1 gene:Y17G7B.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030403 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030410 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12103923-12107747(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y17G7B.18
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19466 Hypothetical protein Y17G7B.18b [Caenorhabditis elegans] ref|NP_496572.1| Y17G7B.18b [Caenorhabditis elegans] 0.0
blast CAA19465 Hypothetical protein Y17G7B.18a [Caenorhabditis elegans] ref|NP_496573.1| Y17G7B.18a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010675 EMBL-EBI Bicoid-interacting 3 6.8E-87
Pfam IPR010675 EMBL-EBI Bicoid-interacting 3 6.8E-87
Pfam IPR010675 EMBL-EBI Bicoid-interacting 3 6.8E-87
Sequence
Target Sequence 
>C. ELEGANS:187012_S_AT
ttctcgccgcgtcgaattatcggaattgatattgatgagcatttgattggagttgcacgc
aagaatattcgacattattgtgatcatgagactgaggtatccggaaaattccccgcctca
tttggtgtacaattcggcacagtaagccaacgaaacgaagctcctcgatcattttccaca
aaattccccgataatatttggtttaaaaaagagaattatgtactggaatcggatgagatg
cttgatatgattcaaccggaatttgatgtgattcttgcattatcaattacaaaatggatt
catttgaattggggtgatgatggaatgaggagattctttagaagagcttatgctcaactt
catcctggaggccgcctaatcatcgaaccacaagcattcgacagctacaaaaaacgtgca
aaaatgagcgaggagttgaaggcaaattactcgaaaatcgagtttaagcccgaggatttc
gagatgtggctcatcgaaactgtcggatttgaatctgtggaaaagctgggcgtcgtcgga
gccaaatcaaaaggattcgaacgtccgattgatgtttatttgaagccattgcacccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCGCCGCGTCGAATTATCGGAA 277 693 529 Antisense
CCCGCCTCATTTGGTGTACAATTCG 365 261 640 Antisense
GAAACGAAGCTCCTCGATCATTTTC 490 357 680 Antisense
TATGCTCAACTTCATCCTGGAGGCC 538 657 877 Antisense
CCTGGAGGCCGCCTAATCATCGAAC 594 265 892 Antisense
GAACCACAAGCATTCGACAGCTACA 691 343 913 Antisense
GATGTGGCTCATCGAAACTGTCGGA 175 409 1011 Antisense
GAATCTGTGGAAAAGCTGGGCGTCG 491 329 1039 Antisense
CTGGGCGTCGTCGGAGCCAAATCAA 419 239 1054 Antisense
GATTCGAACGTCCGATTGATGTTTA 176 433 1082 Antisense
TTATTTGAAGCCATTGCACCCGAAA 686 677 1104 Antisense
Sequence Source Affymetrix Proprietary Database