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[187011_at]

Description C25E10.11 /REP_DB=WormBase Gene ID /WP=CE06873 /TR=Q18160 /GB=AAA92316.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_total > 24      4grp_total > 22      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 208.1
(3)
P 		67.8
(-3)
P 		78
(-2.6)
P 		198.7
(2.6)
P 		140
B 203.6
(3)
P 		107.9
(-1.9)
P 		85.8
(-3)
P 		197.6
(2.7)
P 		118
C 243.8
(3)
P 		94.6
(-1.7)
P 		55.3
(-3)
P 		223.4
(2.4)
P 		189
avr 218.5
(3) 		90.1
(-2.3) 		73
(-3) 		206.6
(2.5) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 86.9
(-0.1)
P 		103.6
(1.3)
P 		123.4
(3)
P 		89.9
(0.2)
P 		68.3
(-1.6)
P 		51.7
(-3)
A 		72
B 166.4
(3)
P 		135.6
(1)
P 		117.7
(-0.1)
P 		90.9
(-1.8)
P 		71.7
(-3)
P 		74.1
(-2.8)
P 		95
C 137.3
(2.6)
P 		143.1
(3)
P 		81
(-1.4)
P 		79.9
(-1.4)
P 		57.8
(-3)
P 		84.4
(-1.1)
P 		85
avr 130.2
(3) 		127.4
(2.7) 		107.4
(0.9) 		86.9
(-1) 		65.9
(-3) 		70.1
(-2.6) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 75.8
(3)
P 		14.7
(-3)
P 		20.4
(-2.4)
P 		29.1
(-1.6)
P 		61
B 64.9
(3)
P 		26.7
(-2.1)
P 		19.9
(-3)
P 		42.1
(-0)
P 		45
C 80.7
(3)
P 		27.2
(-2.2)
P 		19.3
(-3)
P 		37.7
(-1.2)
P 		61
avr 73.8
(3) 		22.9
(-2.7) 		19.9
(-3) 		36.3
(-1.2) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 16
(-2.2)
P 		36.9
(3)
P 		26.9
(0.5)
P 		22.8
(-0.5)
P 		20.6
(-1)
P 		12.6
(-3)
A 		24
B 57.9
(3)
P 		45.1
(0.7)
P 		28.6
(-2.2)
P 		24.1
(-3)
P 		29.1
(-2.1)
P 		27.6
(-2.4)
P 		34
C 50.9
(3)
P 		43.7
(1.8)
P 		20.6
(-2.2)
P 		16.1
(-3)
P 		18.7
(-2.6)
P 		28.2
(-0.9)
P 		35
avr 41.6
(2.9) 		41.9
(3) 		25.4
(-1.7) 		21
(-3) 		22.8
(-2.5) 		22.8
(-2.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12241
Sequence Type Exemplar sequence
Representative Public ID C25E10.11 NCBI
Target Description C25E10.11 /REP_DB=WormBase Gene ID /WP=CE06873 /TR=Q18160 /GB=AAA92316.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072947 NCBI Caenorhabditis elegans C25E10.11 (C25E10.11) mRNA, complete cds. 11/11 None
SNAP00000038741 ENSEMBL cdna:SNAP chromosome:CEL140:V:9060236:9060919:-1 11/11 None
GENEFINDER00000038747 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9055949:9060919:-1 11/11 None
C25E10.11 ENSEMBL cdna:known chromosome:CEL140:V:9060236:9060919:-1 gene:C25E10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9060236-9060920(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25E10.11
Entrez Gene 182895 Entrez gene
SwissProt Q18160 EMBL-EBI
WormBase CE06873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92315 Hypothetical protein C25E10.10 [Caenorhabditis elegans] ref|NP_505347.1| C25E10.10 [Caenorhabditis elegans] 8.0E-86
blast AAA92313 Hypothetical protein C25E10.8 [Caenorhabditis elegans] ref|NP_505345.1| C25E10.8 [Caenorhabditis elegans] 1.0E-73
blast AAA92314 Inhibitor of serine protease like protein protein 2, isoform a [Caenorhabditis elegans] ref|NP_505346.1| Inhibitor of Serine protease Like protein family member (isl-2) [Caenorhabditis elegans] 3.0E-62
blast AAA92316 Hypothetical protein C25E10.11 [Caenorhabditis elegans] ref|NP_505348.1| C25E10.11 [Caenorhabditis elegans] 3.0E-58
blast CAE72088 Hypothetical protein CBG19176 [Caenorhabditis briggsae] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.4E-21
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.8E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.7E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.3E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505348.1 1 4-26
C25E10.11 1 4-26
SNAP00000038741 1 4-26
GENEFINDER00000038747 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:187011_AT
atggcatcctttcgagcaatatacatatcggtgactttaatgtctatagtcatcatatat
ctcaactcgttcgcaaacgaagacaaacccagattggctcgggaaaaccgtccctatact
attctcagtactcatttaaatttgaaagattacgatcggctttgtttgaatggaccaaca
gtgaaatgttacggagagacagtttgcaaagttgcaaaagtagaatgtcttccaaataaa
acatgtgatccgttgatggcaatttgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCATCCTTTCGAGCAATATACA 545 51 13 Antisense
GCAATATACATATCGGTGACTTTAA 688 321 28 Antisense
TCATCATATATCTCAACTCGTTCGC 634 619 62 Antisense
ATATATCTCAACTCGTTCGCAAACG 394 19 67 Antisense
TCGCAAACGAAGACAAACCCAGATT 582 599 83 Antisense
GACAAACCCAGATTGGCTCGGGAAA 623 365 94 Antisense
ACCGTCCCTATACTATTCTCAGTAC 359 89 119 Antisense
ACTATTCTCAGTACTCATTTAAATT 183 103 130 Antisense
GATTACGATCGGCTTTGTTTGAATG 59 431 160 Antisense
GTTACGGAGAGACAGTTTGCAAAGT 48 437 200 Antisense
GTGATCCGTTGATGGCAATTTGCTC 312 481 257 Antisense
Sequence Source Affymetrix Proprietary Database