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[187010_s_at]

Description Y14H12B.2 /REP_DB=WormBase Gene ID /WP=CE21366 /TR=Q9TYP8 /GB=AAD12807.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 150.3
(-3)
A 		233.9
(3)
A 		221.7
(2.1)
P 		196.6
(0.3)
P 		84
B 122.4
(-3)
A 		202.2
(1.3)
A 		199.3
(1.2)
P 		233.2
(3)
P 		111
C 89.8
(-3)
A 		230.7
(3)
P 		212.7
(2.2)
P 		205
(1.9)
P 		141
avr 120.8
(-3) 		222.3
(3) 		211.2
(2.3) 		211.6
(2.4) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 155.9
(-2.5)
A 		95.3
(-3)
M 		124.9
(-2.7)
M 		265.6
(-1.5)
P 		447
(0.2)
P 		756.6
(3)
P 		661
B 113.7
(-2.8)
A 		90.3
(-3)
A 		115.8
(-2.8)
P 		336.6
(-1.2)
P 		449.8
(-0.3)
P 		898.2
(3)
P 		808
C 82.5
(-3)
A 		147.6
(-2.5)
A 		260.1
(-1.5)
P 		285.4
(-1.3)
P 		471
(0.3)
P 		793.4
(3)
P 		711
avr 117.4
(-2.9) 		111.1
(-3) 		166.9
(-2.5) 		295.9
(-1.4) 		455.9
(-0.1) 		816.1
(3) 		705
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 54.7
(2.3)
A 		50.8
(1.5)
A 		58
(3)
P 		28.8
(-3)
P 		29
B 39
(-3)
A 		49.9
(3)
A 		46.2
(1)
P 		49.7
(2.9)
P 		11
C 29.7
(-3)
A 		66.3
(1.9)
P 		74.1
(3)
P 		34.6
(-2.3)
P 		44
avr 41.1
(-2.1) 		55.7
(2) 		59.4
(3) 		37.7
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 28.7
(-2.9)
A 		33.9
(-2.7)
M 		27.2
(-3)
M 		67.4
(-1.5)
P 		134.9
(1.1)
P 		184.2
(3)
P 		157
B 39.6
(-2.8)
A 		30.1
(-3)
A 		28.1
(-3)
P 		89.2
(-1.8)
P 		182.7
(0)
P 		334.9
(3)
P 		307
C 30.6
(-3)
A 		45
(-2.6)
A 		66.2
(-2.1)
P 		57.4
(-2.3)
P 		152.4
(0.1)
P 		265.6
(3)
P 		235
avr 33
(-3) 		36.3
(-2.9) 		40.5
(-2.8) 		71.3
(-2) 		156.7
(0.2) 		261.6
(3) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187010_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5291
Sequence Type Exemplar sequence
Representative Public ID Y14H12B.2 NCBI
Target Description Y14H12B.2 /REP_DB=WormBase Gene ID /WP=CE21366 /TR=Q9TYP8 /GB=AAD12807.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062296 NCBI Caenorhabditis elegans Y14H12B.2 (Y14H12B.2) mRNA, complete cds. 11/11 None
SNAP00000036986 ENSEMBL cdna:SNAP chromosome:CEL140:II:3932316:3933708:-1 11/11 None
GENEFINDER00000036989 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3932316:3933708:-1 11/11 None
Y14H12B.2 ENSEMBL cdna:known chromosome:CEL140:II:3932188:3934018:-1 gene:Y14H12B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3932314-3933707(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y14H12B.2
Entrez Gene 173735 Entrez gene
SwissProt Q9TYP8 EMBL-EBI
WormBase CE21366 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12807 Hypothetical protein Y14H12B.2 [Caenorhabditis elegans] ref|NP_494697.1| Y14H12B.2 [Caenorhabditis elegans] 0.0
blast AAK31410 Hypothetical protein C16A11.4 [Caenorhabditis elegans] ref|NP_494744.2| C16A11.4 [Caenorhabditis elegans] 1.0E-51
blast AAK31409 Hypothetical protein C16A11.3 [Caenorhabditis elegans] ref|NP_494745.1| C16A11.3 [Caenorhabditis elegans] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 3.4E-41
Sequence
Target Sequence 
>C. ELEGANS:187010_S_AT
gattatccgcctagtgatggctcggacaccatctccgtgataaatgtgaacgccggatac
tctttgtattgcccacaacctgctttctatcccaatgtcgatcgctcgatgttcaccgca
atggggcaaatgatgactggcgtgctgcaaatgcaaagtcaaatgatgaaagaggttttg
aaccggggatcgacctccgcaccacctccagctgcaccagaaaccacaagtttgcgcgat
ttcctcgatttcgtgaaggtgtacgtcaataccctgaactcggcgcaaatggacgaagcg
cgccgcctgattcaaaaccttttggccgtctaccgaaacatcgacaagcaaattccgttg
agtaagctgcgtatgggacttgccaccgcaaaaacaatggctgatatgtactcgatcgac
gtcgctgatggagcctcggccaccactttcttccagttcctcgagatttatgcgaatact
ccgaacaattcgcaatttgttaccctctgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCCGCCTAGTGATGGCTCGG 547 429 640 Antisense
ACGCCGGATACTCTTTGTATTGCCC 473 89 689 Antisense
TCTATCCCAATGTCGATCGCTCGAT 305 615 725 Antisense
CTCGATGTTCACCGCAATGGGGCAA 359 227 744 Antisense
CAAGTTTGCGCGATTTCCTCGATTT 255 185 866 Antisense
TCAATACCCTGAACTCGGCGCAAAT 353 633 905 Antisense
GCCGCCTGATTCAAAACCTTTTGGC 256 283 941 Antisense
TGGCCGTCTACCGAAACATCGACAA 253 545 962 Antisense
TAAGCTGCGTATGGGACTTGCCACC 18 639 1002 Antisense
TTTCTTCCAGTTCCTCGAGATTTAT 13 673 1086 Antisense
TTCGCAATTTGTTACCCTCTGCAAC 164 693 1128 Antisense
Sequence Source Affymetrix Proprietary Database