[Home] | [Total List]

[187008_s_at]

Description Y57G7A.10 /REP_DB=WormBase Gene ID /WP=CE19639 /TR=O76630 /GB=AAC26302.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 27      4grp_high_8_8 > 57      6grp_highest_nonorm > 74      6grp_total > 54      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 663.5
(1.6)
P 		618.2
(-3)
P 		677.8
(3)
P 		648.8
(0.1)
P 		60
B 686.4
(0.7)
P 		692.4
(1.2)
P 		715.1
(3)
P 		639.3
(-3)
P 		76
C 719
(2.2)
P 		698.4
(-3)
P 		722
(3)
P 		713.9
(0.9)
P 		24
avr 689.6
(0.5) 		669.7
(-2.6) 		705
(3) 		667.3
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 497.5
(-2.7)
P 		613.5
(1)
P 		595.4
(0.5)
P 		645.6
(2.1)
P 		486.8
(-3)
P 		674.8
(3)
P 		188
B 694.7
(0.8)
P 		543.1
(-3)
P 		782.3
(3)
P 		576.1
(-2.2)
P 		573.2
(-2.2)
P 		551.6
(-2.8)
P 		239
C 733.5
(3)
P 		611.9
(-0.5)
P 		719.9
(2.6)
P 		733.8
(3)
P 		526.8
(-3)
P 		684.6
(1.6)
P 		207
avr 641.9
(1) 		589.5
(-0.9) 		699.2
(3) 		651.8
(1.3) 		528.9
(-3) 		637
(0.8) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 241.6
(3)
P 		134.2
(-1.4)
P 		177.2
(0.4)
P 		95
(-3)
P 		147
B 218.9
(3)
P 		171
(-0.5)
P 		165.7
(-0.9)
P 		136.2
(-3)
P 		83
C 238
(2.4)
P 		200.8
(0.7)
P 		251.6
(3)
P 		120.4
(-3)
P 		131
avr 232.8
(3) 		168.7
(-0.3) 		198.2
(1.2) 		117.2
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 91.7
(-3)
P 		218.2
(3)
P 		129.7
(-1.2)
P 		163.7
(0.4)
P 		146.9
(-0.4)
P 		164.3
(0.4)
P 		127
B 241.7
(3)
P 		180.8
(-1.1)
P 		190
(-0.5)
P 		152.6
(-3)
P 		232.9
(2.4)
P 		205.7
(0.6)
P 		89
C 271.9
(3)
P 		186.7
(-1.1)
P 		183.2
(-1.3)
P 		147.6
(-3)
P 		170.5
(-1.9)
P 		229.2
(0.9)
P 		124
avr 201.8
(3) 		195.2
(2.2) 		167.6
(-1.3) 		154.6
(-3) 		183.4
(0.7) 		199.7
(2.7) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187008_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4401
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.10 NCBI
Target Description Y57G7A.10 /REP_DB=WormBase Gene ID /WP=CE19639 /TR=O76630 /GB=AAC26302.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061544(11), NM_182205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061544 NCBI Caenorhabditis elegans Y57G7A.10a (Y57G7A.10) mRNA, complete cds. 11/11 A 
NM_182205 NCBI Caenorhabditis elegans Y57G7A.10b (Y57G7A.10) mRNA, complete cds. 11/11 None
SNAP00000014160 ENSEMBL cdna:SNAP chromosome:CEL140:II:1302668:1306125:-1 11/11 None
GENEFINDER00000014166 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1302668:1306125:-1 11/11 None
Y57G7A.10a ENSEMBL cdna:known chromosome:CEL140:II:1302516:1306125:-1 gene:Y57G7A.10 11/11 A 
Y57G7A.10b ENSEMBL cdna:known chromosome:CEL140:II:1302566:1306142:-1 gene:Y57G7A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1302666-1306124(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G7A.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26302 Hypothetical protein Y57G7A.10a [Caenorhabditis elegans] ref|NP_493945.1| Y57G7A.10a [Caenorhabditis elegans] 1.0E-155
blast CAE62917 Hypothetical protein CBG07111 [Caenorhabditis briggsae] 1.0E-140
blast AAO38571 Hypothetical protein Y57G7A.10b [Caenorhabditis elegans] ref|NP_872005.1| Y57G7A.10b [Caenorhabditis elegans] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:187008_S_AT
gagcgactggttgaggatgagcccaataataatagcttccgcaagcgaaaagtcgcggtt
cttctcgctcagggaaagcgtctcgacgcaattcgagctatcaacgattacctgaagatt
ttcctgaacgacccagaagcttggcttcagctcagcgagcttttcctgctcgaaaatgac
gtggcaaaggcggtacattgcctggaggagtgtgtgctcatttcgccgctgaattccatg
tatttcagacgattagccgatttgagatatactcaaggaggcgccgaaaacgtggaattg
gctcgttcctactacgaacgtgcgctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGACTGGTTGAGGATGAGCCCA 274 385 340 Antisense
GCGAAAAGTCGCGGTTCTTCTCGCT 239 289 384 Antisense
GCGTCTCGACGCAATTCGAGCTATC 678 291 417 Antisense
GAAGATTTTCCTGAACGACCCAGAA 487 335 453 Antisense
GACCCAGAAGCTTGGCTTCAGCTCA 658 381 469 Antisense
TTCAGCTCAGCGAGCTTTTCCTGCT 134 687 485 Antisense
GGCGGTACATTGCCTGGAGGAGTGT 294 541 528 Antisense
TGGAGGAGTGTGTGCTCATTTCGCC 92 551 542 Antisense
TCATTTCGCCGCTGAATTCCATGTA 668 617 557 Antisense
AACGTGGAATTGGCTCGTTCCTACT 286 139 628 Antisense
TTCCTACTACGAACGTGCGCTCAAA 611 699 645 Antisense
Sequence Source Affymetrix Proprietary Database