[Home] | [Total List]

[187007_at]

Description Y116A8C.36 /REP_DB=WormBase Gene ID /WP=CE23342 /TR=Q9U2T9 /GB=CAB55138.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 22      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 51.4
(0.3)
A 		30.3
(-1.9)
A 		19.9
(-3)
A 		77.9
(3)
A 		58
B 42.8
(3)
A 		18.9
(-2.3)
A 		15.8
(-3)
A 		39.6
(2.3)
A 		27
C 71.9
(3)
A 		23.6
(-1.8)
A 		10.9
(-3)
A 		49.8
(0.8)
A 		61
avr 55.4
(2.9) 		24.3
(-1.7) 		15.5
(-3) 		55.8
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 17.8
(3)
A 		12.4
(0.2)
A 		10.3
(-0.9)
A 		7.5
(-2.4)
A 		6.4
(-3)
A 		15.1
(1.6)
A 		11
B 21.3
(3)
A 		12.5
(-0.4)
A 		8.8
(-1.8)
A 		5.6
(-3)
A 		6.2
(-2.8)
A 		10.5
(-1.1)
A 		16
C 8
(-1.9)
A 		6.2
(-3)
A 		12.9
(1.2)
A 		15.7
(3)
A 		9.1
(-1.2)
A 		9.7
(-0.8)
A 		10
avr 15.7
(3) 		10.4
(-0.7) 		10.7
(-0.5) 		9.6
(-1.3) 		7.2
(-3) 		11.8
(0.2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.7
(3)
A 		6.6
(-2.4)
A 		5.2
(-3)
A 		11.4
(-0.2)
A 		14
B 13.6
(3)
A 		4.7
(-2.4)
A 		3.7
(-3)
A 		8.4
(-0.2)
A 		10
C 23.8
(3)
A 		6.8
(-2.1)
A 		3.8
(-3)
A 		8.4
(-1.6)
A 		20
avr 18.7
(3) 		6
(-2.3) 		4.2
(-3) 		9.4
(-0.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.3
(0.4)
A 		4.4
(3)
A 		2.2
(-2.3)
A 		1.9
(-3)
A 		1.9
(-3)
A 		3.7
(1.3)
A 		3
B 7.4
(3)
A 		4.2
(-0.3)
A 		2.1
(-2.4)
A 		1.5
(-3)
A 		2.5
(-2)
A 		3.9
(-0.6)
A 		6
C 3
(1.7)
A 		1.9
(-3)
A 		3.3
(3)
A 		3.1
(2.1)
A 		2.9
(1.3)
A 		3.2
(2.6)
A 		1
avr 4.6
(3) 		3.5
(0.3) 		2.5
(-2.3) 		2.2
(-3) 		2.4
(-2.5) 		3.6
(0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8442
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.36 NCBI
Target Description Y116A8C.36 /REP_DB=WormBase Gene ID /WP=CE23342 /TR=Q9U2T9 /GB=CAB55138.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070636 NCBI Caenorhabditis elegans ITSN (intersectin) family member (itsn-1) (itsn-1) mRNA, complete cds. 11/11 None
SNAP00000004107 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17119640:17125891:1 11/11 None
GENEFINDER00000004201 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17119421:17125891:1 11/11 None
Y116A8C.36 ENSEMBL cdna:known chromosome:CEL140:IV:17119640:17126194:1 gene:Y116A8C.36 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17119645-17125897(+) 97.27 100.0
Public Domain and Genome References
Gene Title
Gene Symbol itsn-1
Ensembl Y116A8C.36
Entrez Gene 178491 Entrez gene
SwissProt Q9U2T9 EMBL-EBI
WormBase CE23342 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586565_AT similar to Intersectin 1 (SH3 domain-containing protein 1A) (SH3P17) cfa
CANINE:1585152_AT similar to Intersectin 1 (SH3 domain-containing protein 1A) (SH3P17) cfa
CANINE_2:CFA.15687.1.A1_AT similar to Intersectin 1 (SH3 domain-containing protein 1A) (SH3P17) cfa
CANINE_2:CFA.15723.1.A1_AT similar to Intersectin 1 (SH3 domain-containing protein 1A) (SH3P17) cfa
CANINE_2:CFAAFFX.14960.1.S1_S_AT similar to Intersectin 1 (SH3 domain-containing protein 1A) (SH3P17) cfa
CANINE_2:CFAAFFX.14967.1.S1_AT similar to Intersectin 1 (SH3 domain-containing protein 1A) (SH3P17) cfa
DROSOPHILA_2:1630537_A_AT Dynamin associated protein 160 dm
DROSGENOME1:154192_AT Dynamin associated protein 160 dm
CHICKEN:GGA.18825.1.S1_AT intersectin 1 (SH3 domain protein) gga
CHICKEN:GGA.9847.1.S1_S_AT intersectin 1 (SH3 domain protein) gga
HG-U133_PLUS_2:207322_AT intersectin 1 (SH3 domain protein) hs
HG-U133A:207322_AT intersectin 1 (SH3 domain protein) hs
HG-U133A_2:207322_AT intersectin 1 (SH3 domain protein) hs
HG-U95AV2:488_AT intersectin 1 (SH3 domain protein) hs
HC-G110:488_AT intersectin 1 (SH3 domain protein) hs
HG-U133_PLUS_2:209298_S_AT intersectin 1 (SH3 domain protein) hs
HG-U133A:209298_S_AT intersectin 1 (SH3 domain protein) hs
HG-U133A_2:209298_S_AT intersectin 1 (SH3 domain protein) hs
HG-U133_PLUS_2:210713_AT intersectin 1 (SH3 domain protein) hs
HG-U133A:210713_AT intersectin 1 (SH3 domain protein) hs
HG-U133A_2:210713_AT intersectin 1 (SH3 domain protein) hs
HU35KSUBB:RC_AA181724_AT intersectin 1 (SH3 domain protein) hs
HU35KSUBD:RC_Z40680_F_AT intersectin 1 (SH3 domain protein) hs
HUGENEFL:U61166_AT intersectin 1 (SH3 domain protein) hs
HG-U133A:209297_AT intersectin 1 (SH3 domain protein) hs
HG-U133_PLUS_2:209297_AT intersectin 1 (SH3 domain protein) hs
HG-U133A_2:209297_AT intersectin 1 (SH3 domain protein) hs
U133_X3P:G4808824_3P_S_AT intersectin 1 (SH3 domain protein) hs
U133_X3P:G4504796_3P_AT intersectin 1 (SH3 domain protein) hs
U133_X3P:G1438932_3P_AT intersectin 1 (SH3 domain protein) hs
U133_X3P:4898019C_3P_X_AT intersectin 1 (SH3 domain protein) hs
HG-U133A_2:35776_AT intersectin 1 (SH3 domain protein) hs
HG-FOCUS:35776_AT intersectin 1 (SH3 domain protein) hs
HG-U133_PLUS_2:35776_AT intersectin 1 (SH3 domain protein) hs
HG-U133A:35776_AT intersectin 1 (SH3 domain protein) hs
HG-U95AV2:35776_AT intersectin 1 (SH3 domain protein) hs
HG-U95AV2:31964_AT Intersectin 1 (SH3 domain protein) hs
HG-U133_PLUS_2:216472_AT Intersectin 1 (SH3 domain protein) hs
HG-U133A_2:216472_AT Intersectin 1 (SH3 domain protein) hs
HG-U133A:216472_AT Intersectin 1 (SH3 domain protein) hs
HG-U133_PLUS_2:215791_AT Intersectin 1 (SH3 domain protein) hs
HG-U133A_2:215791_AT Intersectin 1 (SH3 domain protein) hs
HG-U133A:215791_AT Intersectin 1 (SH3 domain protein) hs
U133_X3P:HS.302179.0.S1_3P_X_AT Intersectin 1 (SH3 domain protein) hs
U133_X3P:HS.302179.0.S1_3P_AT Intersectin 1 (SH3 domain protein) hs
U133_X3P:HS.268526.0.S1_3P_AT Intersectin 1 (SH3 domain protein) hs
U133_X3P:216472_3P_AT Intersectin 1 (SH3 domain protein) hs
HG-U133_PLUS_2:216637_AT Intersectin 1 (SH3 domain protein) hs
HG-U133A_2:216637_AT Intersectin 1 (SH3 domain protein) hs
HG-U133A:216637_AT Intersectin 1 (SH3 domain protein) hs
HG-U95B:53445_AT Intersectin 1 (SH3 domain protein) hs
HG-U95E:67720_AT Intersectin 1 (SH3 domain protein) hs
HG-U95D:74063_AT Intersectin 1 (SH3 domain protein) hs
HG-U95D:75273_R_AT Intersectin 1 (SH3 domain protein) hs
HG-U95D:83935_AT Intersectin 1 (SH3 domain protein) hs
HU35KSUBB:RC_H54352_AT Intersectin 1 (SH3 domain protein) hs
MOUSE430_2:1421192_A_AT intersectin 1 (SH3 domain protein 1A) mm
MOE430A:1421192_A_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430A_2:1421192_A_AT intersectin 1 (SH3 domain protein 1A) mm
MU11KSUBA:AA517634_RC_AT intersectin 1 (SH3 domain protein 1A) mm
MG-U74AV2:104522_AT intersectin 1 (SH3 domain protein 1A) mm
MG-U74BV2:111561_AT intersectin 1 (SH3 domain protein 1A) mm
MG-U74BV2:107847_AT intersectin 1 (SH3 domain protein 1A) mm
MOE430A:1452338_S_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430A_2:1452338_S_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430_2:1452338_S_AT intersectin 1 (SH3 domain protein 1A) mm
MOE430A:1425899_A_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430A_2:1425899_A_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430_2:1425899_A_AT intersectin 1 (SH3 domain protein 1A) mm
MOE430A:1435885_S_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430A_2:1435885_S_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430_2:1435885_S_AT intersectin 1 (SH3 domain protein 1A) mm
MOE430A:1435884_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430A_2:1435884_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430_2:1435884_AT intersectin 1 (SH3 domain protein 1A) mm
MOE430B:1459621_AT intersectin 1 (SH3 domain protein 1A) mm
MOUSE430_2:1459621_AT intersectin 1 (SH3 domain protein 1A) mm
MOE430B:1441034_AT Intersectin short from (Itsn) mm
MOUSE430_2:1441034_AT Intersectin short from (Itsn) mm
MG-U74BV2:117014_AT Intersectin short from (Itsn) mm
MG-U74CV2:129899_F_AT Intersectin short from (Itsn) mm
MOUSE430_2:1440637_AT Intersectin short from (Itsn) mm
MOE430B:1440637_AT Intersectin short from (Itsn) mm
MOE430B:1442637_AT Intersectin short from (Itsn) mm
MOUSE430_2:1442637_AT Intersectin short from (Itsn) mm
MU19KSUBA:TC20404_AT Intersectin short from (Itsn) mm
MU19KSUBB:TC34615_AT Intersectin short from (Itsn) mm
MU19KSUBC:TC38776_AT Intersectin short from (Itsn) mm
RAT230_2:1395008_AT intersectin 1 rn
RAE230B:1395008_AT intersectin 1 rn
RG-U34C:RC_AI071501_AT intersectin 1 rn
RAE230A:1397161_A_AT intersectin 1 rn
RAT230_2:1397161_A_AT intersectin 1 rn
RAE230B:1378817_AT intersectin 1 rn
RAT230_2:1378817_AT intersectin 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55138 Hypothetical protein Y116A8C.36 [Caenorhabditis elegans] ref|NP_503037.1| ITSN (intersectin) family member (itsn-1) [Caenorhabditis elegans] 0.0
blast CAE57454 Hypothetical protein CBG00418 [Caenorhabditis briggsae] 0.0
blast O42287 Intersectin-1 gb|AAC73068.1| intersectin [Xenopus laevis] 1.0E-64
Protein Domains
Database ID Description E-Value
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 3.59999990463257
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 3.5
scop a.2.7.Phenylalanyl-tRNA synthetase (PheRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) 2.5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0031
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.3
Pfam IPR001452 EMBL-EBI SH3 2.0E-14
Pfam IPR001452 EMBL-EBI SH3 9.4E-13
Pfam IPR001452 EMBL-EBI SH3 2.9E-22
Pfam IPR001452 EMBL-EBI SH3 1.4E-9
Pfam IPR001452 EMBL-EBI SH3 1.8E-19
Pfam IPR001452 EMBL-EBI SH3 2.0E-14
Pfam IPR001452 EMBL-EBI SH3 9.4E-13
Pfam IPR001452 EMBL-EBI SH3 2.9E-22
Pfam IPR001452 EMBL-EBI SH3 1.4E-9
Pfam IPR001452 EMBL-EBI SH3 1.8E-19
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0031
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.3
Pfam IPR001452 EMBL-EBI SH3 2.0E-14
Pfam IPR001452 EMBL-EBI SH3 9.4E-13
Pfam IPR001452 EMBL-EBI SH3 2.9E-22
Pfam IPR001452 EMBL-EBI SH3 1.4E-9
Pfam IPR001452 EMBL-EBI SH3 1.8E-19
Sequence
Target Sequence 
>C. ELEGANS:187007_AT
cccccaacaacaactttacactgtgatctacgattttgaagctgtcgagacaacagattt
ggcactgcatgtcggtgacacaattctagtgctcgagaaaaacgatgaatggtggaaagg
gcgttgcaacggacgtgagggtatcttcccagccaactatgtcgagatatcagtccagca
ggcaggggatccgactccaccaactcaagctccaactccagcggctccaccaaccgtcct
ctgtgaagctaaagttgtcgtggattttgttgcatcggcgccaaatcaattgggaatcaa
agttggcgaaattgtgaaaattcgtgaaaaatcagcagccggctggtgggaaggcgagct
gattcgaaatggaaaaccaatcgccggatggtttcctggagaatatgtaaaagttttgga
agaagccgcttctcctgccactcgagccactgcagtatacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCCAACAACAACTTTACACTGTG 487 259 2691 Antisense
TTTGGCACTGCATGTCGGTGACACA 256 665 2748 Antisense
ACGGACGTGAGGGTATCTTCCCAGC 88 95 2819 Antisense
TCTTCCCAGCCAACTATGTCGAGAT 614 617 2834 Antisense
TCAGTCCAGCAGGCAGGGGATCCGA 303 623 2860 Antisense
CAACCGTCCTCTGTGAAGCTAAAGT 381 185 2921 Antisense
TTGTTGCATCGGCGCCAAATCAATT 134 695 2957 Antisense
GCAGCCGGCTGGTGGGAAGGCGAGC 73 313 3025 Antisense
CAATCGCCGGATGGTTTCCTGGAGA 509 179 3068 Antisense
TTGGAAGAAGCCGCTTCTCCTGCCA 284 709 3106 Antisense
CCACTCGAGCCACTGCAGTATACGA 629 273 3128 Antisense
Sequence Source Affymetrix Proprietary Database