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[187006_at]

Description C46H11.10 /REP_DB=WormBase Gene ID /WP=CE08792 /TR=Q9GYJ0 /GB=AAF99889.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 03      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 61      6grp_total > 24      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 617.2
(3)
P 		310.8
(-0.9)
P 		142.2
(-3)
P 		597.1
(2.7)
P 		475
B 588.5
(1.9)
P 		307.8
(-1.5)
P 		178.6
(-3)
P 		684.2
(3)
P 		506
C 746.7
(3)
P 		337.5
(-1.4)
P 		192
(-3)
P 		593.2
(1.3)
P 		555
avr 650.8
(3) 		318.7
(-1.2) 		170.9
(-3) 		624.8
(2.7) 		480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 496.7
(2.8)
P 		502
(3)
P 		420.6
(0.1)
P 		376
(-1.5)
P 		335.1
(-3)
P 		366.4
(-1.9)
P 		167
B 580
(3)
P 		478.5
(0.4)
P 		454.8
(-0.2)
P 		371.8
(-2.3)
P 		394.4
(-1.7)
P 		344.4
(-3)
P 		236
C 598.9
(3)
P 		454.6
(0.5)
P 		509.8
(1.4)
P 		363.6
(-1.1)
P 		256.3
(-3)
P 		313.5
(-2)
P 		343
avr 558.5
(3) 		478.4
(0.9) 		461.7
(0.5) 		370.5
(-1.9) 		328.6
(-3) 		341.4
(-2.7) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 224.7
(3)
P 		67.5
(-2)
P 		37.2
(-3)
P 		87.4
(-1.4)
P 		188
B 187.7
(3)
P 		76
(-1.6)
P 		41.4
(-3)
P 		145.8
(1.3)
P 		146
C 247.2
(3)
P 		97
(-2)
P 		66.9
(-3)
P 		100
(-1.9)
P 		180
avr 219.9
(3) 		80.2
(-1.9) 		48.5
(-3) 		111.1
(-0.8) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 91.6
(-2.8)
P 		178.5
(3)
P 		91.6
(-2.8)
P 		95.4
(-2.6)
P 		101.1
(-2.2)
P 		89.2
(-3)
P 		89
B 201.8
(3)
P 		159.3
(0.5)
P 		110.4
(-2.3)
P 		98.5
(-3)
P 		160.3
(0.6)
P 		128.4
(-1.3)
P 		103
C 222
(3)
P 		138.7
(-0.4)
P 		129.8
(-0.7)
P 		73.1
(-3)
P 		82.9
(-2.6)
P 		105
(-1.7)
P 		149
avr 171.8
(3) 		158.8
(2.1) 		110.6
(-1.4) 		89
(-3) 		114.8
(-1.1) 		107.5
(-1.7) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2265
Sequence Type Exemplar sequence
Representative Public ID C46H11.10 NCBI
Target Description C46H11.10 /REP_DB=WormBase Gene ID /WP=CE08792 /TR=Q9GYJ0 /GB=AAF99889.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025874(11), NM_001025875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025874 NCBI Caenorhabditis elegans C46H11.10a (C46H11.10) mRNA, complete cds. 11/11 None
NM_001025875 NCBI Caenorhabditis elegans C46H11.10b (C46H11.10) mRNA, complete cds. 11/11 None
SNAP00000043109 ENSEMBL cdna:SNAP chromosome:CEL140:I:5052709:5054886:-1 11/11 None
GENEFINDER00000043164 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5052709:5054886:-1 11/11 None
C46H11.10b.1 ENSEMBL cdna:known chromosome:CEL140:I:5052544:5054861:-1 gene:C46H11.10 11/11 None
C46H11.10b.2 ENSEMBL cdna:known chromosome:CEL140:I:5052544:5054404:-1 gene:C46H11.10 11/11 None
C46H11.10a ENSEMBL cdna:known chromosome:CEL140:I:5052709:5054886:-1 gene:C46H11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5052708-5054886(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46H11.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68949 Hypothetical protein C46H11.10a [Caenorhabditis elegans] ref|NP_001021045.1| C46H11.10a [Caenorhabditis elegans] 0.0
blast T25645 hypothetical protein C46H11.10 - Caenorhabditis elegans 0.0
blast T25645 hypothetical protein C46H11.10 - Caenorhabditis elegans 1.0E-166
blast AAP68949 Hypothetical protein C46H11.10a [Caenorhabditis elegans] ref|NP_001021045.1| C46H11.10a [Caenorhabditis elegans] 1.0E-164
blast AAP68950 Hypothetical protein C46H11.10b [Caenorhabditis elegans] ref|NP_001021046.1| C46H11.10b [Caenorhabditis elegans] 1.0E-133
blast AAP68950 Hypothetical protein C46H11.10b [Caenorhabditis elegans] ref|NP_001021046.1| C46H11.10b [Caenorhabditis elegans] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:187006_AT
aatccgtgcatttgtcgtcgagagattatttggaaaaagttttgaaatggattttggcaa
gatatcaattcaaaaagattcatctcggagttcaaggcctggctccgcttttctcttcct
acaaaggcgaaatcgaaaatgttggaatatcggatgaaattgaatatctgaagctcgctg
aaaaattccgtccaaaacatttgacgcttttcaaaccagcacagaatacctataacaaag
gatttttcgatttaaagaaatttccgcagctagaagagctccggatgtatggagtgccat
tggatttggatcaattgatcgaatcaaatatatcagaagtggcagctgatacaattgata
aggatattaaattgaagcataactggaaaaatggaataatcaattacaaatcaataatga
ttagtccatcatgcagtcaatttggaatatattgccctcataatcagtggagtgagctaa
cagatcacttggttgaagcaaatgccctctacgataatgtagtgaatattaaagaaaaaa
tcggatcggctagatattcgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGTGCATTTGTCGTCGAGAGA 312 167 425 Antisense
CTCGGAGTTCAAGGCCTGGCTCCGC 253 231 508 Antisense
GCTTTTCTCTTCCTACAAAGGCGAA 167 305 531 Antisense
AGCTCGCTGAAAAATTCCGTCCAAA 665 79 596 Antisense
GACGCTTTTCAAACCAGCACAGAAT 621 379 627 Antisense
ATTTCCGCAGCTAGAAGAGCTCCGG 315 15 684 Antisense
GAGCTCCGGATGTATGGAGTGCCAT 656 387 700 Antisense
GATTAGTCCATCATGCAGTCAATTT 416 429 843 Antisense
GGAATATATTGCCCTCATAATCAGT 215 531 868 Antisense
GAAGCAAATGCCCTCTACGATAATG 219 339 919 Antisense
ATCGGATCGGCTAGATATTCGCCAA 402 35 964 Antisense
Sequence Source Affymetrix Proprietary Database