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[187005_at]

Description C41C4.1 /REP_DB=WormBase Gene ID /WP=CE01516 /TR=SW:Q09272 /GB=CAA88098.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 09      6grp_total > 33      4grp_total > 22      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 173.7
(2.7)
P 		95.9
(-1.7)
P 		73
(-3)
P 		178.6
(3)
P 		106
B 184.9
(3)
P 		85.5
(-2.4)
A 		75.2
(-3)
M 		170.1
(2.2)
P 		110
C 184.2
(3)
P 		98.2
(-2.4)
P 		88.3
(-3)
P 		164.6
(1.8)
P 		96
avr 180.9
(3) 		93.2
(-2.2) 		78.8
(-3) 		171.1
(2.4) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 99.8
(2.8)
A 		63
(-0.7)
P 		102.4
(3)
P 		57.9
(-1.1)
P 		47.3
(-2.1)
A 		37.9
(-3)
A 		65
B 85.2
(1.5)
P 		78
(0.4)
P 		55.3
(-3)
A 		60.4
(-2.2)
A 		95.6
(3)
A 		71.2
(-0.6)
P 		40
C 104.3
(3)
P 		97.5
(2)
P 		88.6
(0.8)
A 		87.4
(0.6)
A 		61.7
(-3)
P 		62.8
(-2.8)
M 		43
avr 96.4
(3) 		79.5
(0.4) 		82.1
(0.8) 		68.6
(-1.3) 		68.2
(-1.3) 		57.3
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 63.2
(3)
P 		20.8
(-2.8)
P 		19.1
(-3)
P 		26.1
(-2)
P 		44
B 59
(3)
P 		21.1
(-2.5)
A 		17.4
(-3)
M 		36.2
(-0.3)
P 		42
C 61
(3)
P 		28.2
(-2.9)
P 		30.8
(-2.5)
P 		27.8
(-3)
P 		33
avr 61.1
(3) 		23.4
(-2.8) 		22.4
(-3) 		30
(-1.8) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.4
(1.2)
A 		22.4
(3)
P 		22.3
(3)
P 		14.7
(-0.5)
P 		14.3
(-0.7)
A 		9.2
(-3)
A 		13
B 29.6
(0.8)
P 		26
(-0)
P 		13.4
(-3)
A 		16
(-2.4)
A 		38.8
(3)
A 		26.5
(0.1)
P 		25
C 38.6
(3)
P 		29.8
(0.5)
P 		22.6
(-1.6)
A 		17.6
(-3)
A 		20
(-2.3)
P 		21
(-2)
M 		21
avr 28.9
(3) 		26.1
(1.7) 		19.4
(-1.5) 		16.1
(-3) 		24.4
(0.9) 		18.9
(-1.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3351
Sequence Type Exemplar sequence
Representative Public ID C41C4.1 NCBI
Target Description C41C4.1 /REP_DB=WormBase Gene ID /WP=CE01516 /TR=SW:Q09272 /GB=CAA88098.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063298 NCBI Caenorhabditis elegans C41C4.1 (C41C4.1) mRNA, complete cds. 11/11 None
SNAP00000036855 ENSEMBL cdna:SNAP chromosome:CEL140:II:8105660:8106521:-1 11/11 None
GENEFINDER00000036867 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8105660:8106864:-1 11/11 None
C41C4.1 ENSEMBL cdna:known chromosome:CEL140:II:8105535:8106864:-1 gene:C41C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8105656-8106861(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41C4.1
Entrez Gene 174304 Entrez gene
SwissProt Q09272 EMBL-EBI
WormBase CE01516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88098 Hypothetical protein C41C4.1 [Caenorhabditis elegans] ref|NP_495699.1| C41C4.1 [Caenorhabditis elegans] sp|Q09272|YQG1_CAEEL Hypothetical protein C41C4.1 in chromosome II 0.0
blast CAA88098 Hypothetical protein C41C4.1 [Caenorhabditis elegans] ref|NP_495699.1| C41C4.1 [Caenorhabditis elegans] sp|Q09272|YQG1_CAEEL Hypothetical protein C41C4.1 in chromosome II 1.0E-128
blast CAE67761 Hypothetical protein CBG13336 [Caenorhabditis briggsae] 1.0E-117
blast CAE67761 Hypothetical protein CBG13336 [Caenorhabditis briggsae] 1.0E-106
blast CAB04310 Hypothetical protein F36D1.8 [Caenorhabditis elegans] ref|NP_492891.1| F36D1.8 [Caenorhabditis elegans] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 4.3E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495699.1 1 4-23
C41C4.1 1 4-23
GENEFINDER00000036867 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:187005_AT
gtttggagtcatcgtttttgtggtgaaaagaatgaatatcgaagaatgaatgaagtgaaa
tggagaatgggtgatgcacatcatacatttaaaaagattgtagtcattcgagacccaatt
gctagattcatttcatttttttcaaacaaatgcattttcgaagcccaaaaataccctgat
cgtaagcaatgctataattgtcaaggaaatgtcacttgctttttggaaaaacaatatgaa
cgttttgttcaacattcaagtgattattcgagaataagaccatcttatgaagataaacat
gctgctccgttatcctggaattgtgaatttggaaagtttctcaaagattataaaattata
aaactggctgttgacccaaaagatcggaaaaatggattagcaaatttgatgaatgtactc
aaagaaagcaatgttccaaattcaacgctacgatttattgaaaaatcagcattggaagga
gaaacaatgcatgcaacttatgattcagatgctcacgatgttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGAGTCATCGTTTTTGTGGTG 590 451 373 Antisense
AGATTGTAGTCATTCGAGACCCAAT 588 65 467 Antisense
GAGACCCAATTGCTAGATTCATTTC 145 395 482 Antisense
AACAAATGCATTTTCGAAGCCCAAA 430 135 517 Antisense
GAAGCCCAAAAATACCCTGATCGTA 462 343 532 Antisense
AGGAAATGTCACTTGCTTTTTGGAA 365 55 576 Antisense
GATAAACATGCTGCTCCGTTATCCT 53 423 664 Antisense
GCTGCTCCGTTATCCTGGAATTGTG 679 295 673 Antisense
AACTGGCTGTTGACCCAAAAGATCG 613 141 734 Antisense
ATGTTCCAAATTCAACGCTACGATT 100 47 803 Antisense
TGATTCAGATGCTCACGATGTTGTG 230 561 873 Antisense
Sequence Source Affymetrix Proprietary Database