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[187004_at]

Description R11G11.11 /REP_DB=WormBase Gene ID /WP=CE12760 /TR=O16953 /GB=AAC69085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 20      6grp_cgc > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.4
(3)
A 		3.4
(-2.8)
A 		2.8
(-3)
A 		8.7
(-0.7)
A 		16
B 2.7
(-3)
A 		3.8
(-0.3)
A 		4.5
(1.5)
A 		5.1
(3)
A 		2
C 3
(-2.9)
A 		11.8
(-0.2)
A 		2.7
(-3)
A 		22.2
(3)
A 		20
avr 8
(0.2) 		6.3
(-0.9) 		3.3
(-3) 		12
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(-1)
A 		4.6
(0.6)
A 		1.5
(-3)
A 		3.3
(-0.9)
A 		2.1
(-2.3)
A 		6.7
(3)
A 		5
B 1.8
(-3)
A 		2.1
(-2.9)
A 		3.6
(-2.1)
A 		3
(-2.4)
A 		1.9
(-3)
A 		14.3
(3)
A 		13
C 1.9
(-2.5)
A 		2
(-2.4)
A 		7.5
(3)
A 		2.5
(-1.9)
A 		1.4
(-3)
A 		2
(-2.4)
A 		6
avr 2.3
(-2.5) 		2.9
(-1.9) 		4.2
(-0.6) 		2.9
(-1.9) 		1.8
(-3) 		7.7
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.7
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1.3
(-2.4)
A 		6
B 0.9
(-3)
A 		0.9
(-3)
A 		1.1
(3)
A 		1.1
(3)
A 		0
C 1
(-2.8)
A 		3.4
(2.4)
A 		0.9
(-3)
A 		3.7
(3)
A 		3
avr 2.9
(3) 		1.7
(-0.6) 		0.9
(-3) 		2
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-1.7)
A 		1.7
(3)
A 		0.3
(-3)
A 		0.8
(-0.9)
A 		0.6
(-1.7)
A 		1.6
(2.6)
A 		1
B 0.6
(-3)
A 		0.7
(-2.9)
A 		0.9
(-2.6)
A 		0.8
(-2.7)
A 		0.8
(-2.7)
A 		5.3
(3)
A 		5
C 0.7
(-2.1)
A 		0.6
(-2.6)
A 		1.9
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.7
(-2.1)
A 		1
avr 0.6
(-3) 		1
(-1.7) 		1
(-1.7) 		0.7
(-2.7) 		0.6
(-3) 		2.5
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15633
Sequence Type Exemplar sequence
Representative Public ID R11G11.11 NCBI
Target Description R11G11.11 /REP_DB=WormBase Gene ID /WP=CE12760 /TR=O16953 /GB=AAC69085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R11G11.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:515616:517217:-1 gene:R11G11.11 None
GENEFINDER00000021496 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:513219:516418:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021485 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:515231-516641(-) 100.0 100.0
Public Domain and Genome References
Ensembl R11G11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D88930 protein R11G11.10 [imported] - Caenorhabditis elegans 5.0E-94
blast E88930 protein R11G11.11 [imported] - Caenorhabditis elegans 6.0E-89
blast NP_503232 Serpentine Receptor, class W family member (srw-107) [Caenorhabditis elegans] gb|AAC69087.2| Serpentine receptor, class w protein 107 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021496 5 155-177,215-237,286-305,340-362,377-399
Sequence
Target Sequence 
>C. ELEGANS:187004_AT
tcaacttcttccaagttcatccttcccgataataactgcgcttcttctacgggagcttcg
aaaactccataaattcagtccaacgctacaaagaaatggcgttgtagaagaccatgaaga
aaaatatgggctcccgacaaaacttataactttactcacaattatgtcacttttatcaga
cgctccattgggattcattgagatgacaaaaaccttcttgcaacagggaactgcattgat
acgatttctgacagatcttatgatctacttcaatattttctcaactgctgtgtcgatttt
tcgtccaatcaggttaaaaagaagaggatcacagattcggcagaaaaccacatacataaa
aattacaaaaaggtttgctatacaaatattaacaaaaaaacaaaggttgacccccttgtg
cgataacaatacaaatttattttttgaatttgaagaggcaaccaacatattctcaaaatt
actatcgactgttcctgaaaaaaaaaggatttccatacaattgcagcatataattattgc
aagctctttggcaaatccaagatcgagaacacctgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTTCTTCCAAGTTCATCCTTC 127 631 390 Antisense
ATCCTTCCCGATAATAACTGCGCTT 577 39 408 Antisense
GCTTCTTCTACGGGAGCTTCGAAAA 26 281 429 Antisense
CTCCATAAATTCAGTCCAACGCTAC 657 233 454 Antisense
ATGTCACTTTTATCAGACGCTCCAT 102 49 553 Antisense
AAAACCTTCTTGCAACAGGGAACTG 703 129 598 Antisense
ACTGCTGTGTCGATTTTTCGTCCAA 138 99 673 Antisense
TTGACCCCCTTGTGCGATAACAATA 326 681 796 Antisense
AAATTACTATCGACTGTTCCTGAAA 138 117 865 Antisense
AAGGATTTCCATACAATTGCAGCAT 140 159 894 Antisense
AATCCAAGATCGAGAACACCTGCTG 229 167 943 Antisense
Sequence Source Affymetrix Proprietary Database