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[187002_at]

Description F53G12.11 /REP_DB=WormBase Gene ID /WP=CE11026 /TR=O01794 /GB=AAB54166.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 18.6
(-1.1)
A 		12.8
(-2)
A 		6.2
(-3)
A 		44.6
(3)
A 		38
B 61.9
(3)
A 		18.2
(-3)
A 		22.9
(-2.4)
A 		42.6
(0.4)
A 		44
C 26
(-1.7)
A 		7.9
(-3)
A 		9.5
(-2.9)
A 		90.7
(3)
A 		83
avr 35.5
(-0.1) 		13
(-3) 		12.9
(-3) 		59.3
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 29.9
(1)
A 		43.1
(3)
A 		31.1
(1.2)
A 		21.9
(-0.2)
A 		8.7
(-2.1)
A 		3
(-3)
A 		40
B 19.8
(0.6)
A 		21.7
(1.1)
A 		29.1
(3)
A 		8.5
(-2.4)
A 		23.6
(1.6)
A 		6.2
(-3)
A 		23
C 33.9
(3)
A 		13.5
(-1)
A 		4.1
(-2.8)
A 		7.4
(-2.1)
A 		3
(-3)
A 		29.9
(2.2)
A 		31
avr 27.9
(3) 		26.1
(2.3) 		21.4
(0.6) 		12.6
(-2.7) 		11.8
(-3) 		13
(-2.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.8
(3)
A 		2.8
(-1.6)
A 		1.6
(-3)
A 		6.5
(2.7)
A 		5
B 19.7
(3)
A 		4.5
(-3)
A 		5.3
(-2.7)
A 		9.1
(-1.2)
A 		15
C 8.6
(-0.1)
A 		2.3
(-3)
A 		3.3
(-2.5)
A 		15.3
(3)
A 		13
avr 11.7
(3) 		3.2
(-3) 		3.4
(-2.9) 		10.3
(2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.5
(-1)
A 		15.3
(3)
A 		6.8
(-0.5)
A 		5.6
(-1)
A 		2.6
(-2.2)
A 		0.7
(-3)
A 		15
B 6.9
(0.8)
A 		7.2
(1)
A 		7.1
(0.9)
A 		2.3
(-3)
A 		9.6
(3)
A 		2.3
(-3)
A 		7
C 12.6
(3)
A 		4.1
(-1.4)
A 		1
(-3)
A 		1.5
(-2.7)
A 		1
(-3)
A 		10
(1.7)
A 		12
avr 8.3
(2.4) 		8.9
(3) 		5
(-1) 		3.1
(-3) 		4.4
(-1.7) 		4.3
(-1.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2598
Sequence Type Exemplar sequence
Representative Public ID F53G12.11 NCBI
Target Description F53G12.11 /REP_DB=WormBase Gene ID /WP=CE11026 /TR=O01794 /GB=AAB54166.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058284 NCBI Caenorhabditis elegans F53G12.11 (F53G12.11) mRNA, complete cds. 11/11 None
F53G12.11 ENSEMBL cdna:known chromosome:CEL140:I:145331:145627:-1 gene:F53G12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:145330-145627(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53G12.11
Entrez Gene 186190 Entrez gene
SwissProt O01794 EMBL-EBI
WormBase CE11026 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46983 protein dimerization activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54166 Hypothetical protein F53G12.11 [Caenorhabditis elegans] ref|NP_490685.1| F53G12.11 [Caenorhabditis elegans] 5.0E-49
blast XP_780765 PREDICTED: similar to Zinc finger BED domain containing protein 1 (dREF homolog) (Putative Ac-like transposable element) [Strongylocentrotus purpuratus] 3.0E-9
blast XP_797872 PREDICTED: similar to Zinc finger BED domain containing protein 1 (dREF homolog) (Putative Ac-like transposable element) [Strongylocentrotus purpuratus] 4.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR008906 EMBL-EBI HAT dimerisation 7.7E-27
Sequence
Target Sequence 
>C. ELEGANS:187002_AT
atgctctgtgctagtgcagaagttgaagttttctacgataccgataacaatagaaaatca
gaccccgctgttttttggcaaaatccgctcaatcgatctaagtttccattgctttctcaa
atagcgaacagatatctgacaactccagcttcatctgctgaatcggaacgagttttttca
ggagctggccgcgtttctacaaagctgagaagaaagatgtctacaaagtcgttgagcaag
tctgtgttctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTGTGCTAGTGCAGAAGTTG 86 41 13 Antisense
GTTGAAGTTTTCTACGATACCGATA 540 437 34 Antisense
TAGAAAATCAGACCCCGCTGTTTTT 252 651 63 Antisense
GTTTTTTGGCAAAATCCGCTCAATC 161 449 82 Antisense
TCCGCTCAATCGATCTAAGTTTCCA 43 597 96 Antisense
TAAGTTTCCATTGCTTTCTCAAATA 272 637 111 Antisense
ATATCTGACAACTCCAGCTTCATCT 100 21 144 Antisense
CCAGCTTCATCTGCTGAATCGGAAC 352 273 157 Antisense
CGAGTTTTTTCAGGAGCTGGCCGCG 367 247 181 Antisense
TGGCCGCGTTTCTACAAAGCTGAGA 174 545 198 Antisense
GTCGTTGAGCAAGTCTGTGTTCTTA 595 473 240 Antisense
Sequence Source Affymetrix Proprietary Database